Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1049 ATGATGGCTCCTTCTCAGCCACCTCATTGGGCCCCATCTCCATCTCTAACACCAACACCAATCCTCCACAAGTCTTTCTTTCCCCCACCGTCAAACTCGCCGGCGGTTGACTTCAGTCCGCCCTTGATTGCAATGGTCGTCGTCGTCGCCGCCGCTTTCCTCGTCGTCACCTACTCCCGCCTCATCGCGCGCCACCTCAGACCTCCCATCCACCGCCTCCTCCGCCGCTTCCGTCGACGCCGCTTCCTCCCATCCTCCGTCGGCGACCTCGAGTCCTTACCCTACGAGTCTCCCTTTGATGGACCGCACGTGTTCTCTCCTTACGGTTTGGACGAAACGGTGATTAAAACAATTCCGTTTTCGCTTTACACCGCGAAATACGACGCTCGTTTTGACGAGTCTCGCAACGACTGCGCCGTTTGCCTTCTCGAATTCGAAGACGATGATTACGTGAGAACGCTTCCCATTTGTTCGCACACGTTCCACGTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGTCCTCTCTGCCGCGCCGGAGTTCTCTGCACCGATTCACCTTTCACTCCGATGATGGCTGCCAGAATCCGACCAAGCTTCGACGACGACACAATTCTCCACCGTATCAGTATAGATCCTCTCATCGATCCGCCGCTGCTGCCTGCGGCGGCTATCTCCTCCGTGCCGGAGATTACTCCCTGCGTCGACGAGAATTCTCCAAGGAGGAACCAGAACCATGCAAACGTGAATTCAGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGATCGTACTCGTTCGGATTTGAACGGAGTCTGGCGTCGGAGAGGATGGTGATGGAACCGGCGACAGCGTCGCCGTGGCGGTACCGGAGAGGGAGTAGTAGTTTCTGGAGCAAGAGGCCTTCGCCGTTTGGATCGTTGGGGAAGCCGAGGGTGTTTTCGTTTAGGTATTATAGAGGAATGAAGTCACCGTTCTTCCGGCGGAGGGGATTTTTTCCGTTGTCGGAGTCGAGCGTGAGGTACGGCGGCGGCGGCGGCGGCGGGGGGAGCTCGTCGCGGCGGAGCAAGTCGATAGCAAGTCCGATGTTTCTGCGGTCGTCGGGGGTGACGTCGGCGGCGGCGTTCTCGTCGAGCAGGCTGAGGTGCGGGGATCCCGAGGCGCTTCTTTCGCCGGAGAGGTTTAACGGGAGGTGA 1200 0.5817 MMAPSQPPHWAPSPSLTPTPILHKSFFPPPSNSPAVDFSPPLIAMVVVVAAAFLVVTYSRLIARHLRPPIHRLLRRFRRRRFLPSSVGDLESLPYESPFDGPHVFSPYGLDETVIKTIPFSLYTAKYDARFDESRNDCAVCLLEFEDDDYVRTLPICSHTFHVDCIDAWLRSHANCPLCRAGVLCTDSPFTPMMAARIRPSFDDDTILHRISIDPLIDPPLLPAAAISSVPEITPCVDENSPRRNQNHANVNSEDCFRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGGGGGGGGSSSRRSKSIASPMFLRSSGVTSAAAFSSSRLRCGDPEALLSPERFNGR* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1049 399 SMART ring_2 138 179 IPR001841 -
Gso11g1049 399 SUPERFAMILY RING/U-box 123 186 - -
Gso11g1049 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 184 IPR013083 -
Gso11g1049 399 CDD RING-H2_PA-TM-RING 137 180 - -
Gso11g1049 399 Pfam Ring finger domain 136 180 IPR001841 -
Gso11g1049 399 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Gso11g1049 399 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 371 - -
Gso11g1049 399 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 371 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1049 Gso-Chr11 9349051 9351298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1049 31 399 C3H Transcription Factor Family AT3G18930 51.117 1.90e-96 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1049 - K19041 gmx:100806115 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0394 12 3461784 3464121 Gso11g1049 11 9349051 9351298 GST