Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1005 ATGGCTTCTGCAGATGTTGAGTTCCGTTGCTTTGTTGGTGGGCTTGCTTGGGTCACCGGCAACGATGCCCTCGAGAAAGCCTTTTCAATCTACGGCGACATCGTTGAATCGAAGGTTATCAACGACCGTGAGACTGGAAGGTCCAGAGGATTCGGATTTGTGACCTTCGCCTCAGAGCAGTCAATGAAAGATGCGATCGCAGGAATGAACGGCCAGGACCTTGACGGCCGTAACATCACTGTCAACGAAGCTCAGACCCGCGCCAGCCGTGGTGGTGGTGGAGGCGGTGGTTTCGGAAGTGGTGGTGGATACAACCGCGGTAGCGGTGGATATGGTGGTGGTGGTGGCGGCGGCGGATACGGTGGTCGTCGTGAAGGTGGATACAACCGTAATGGTGGGGGTGGAGGTGGAGGATACGGCGGTGGTAGAGACCGTGGTTACGGTGGTGATGGTGGTTCTCGCTACTCTCGCGGTGGGGAAGGCGGTGGATCCGATGGAAACTGGAGAAATTAG 513 0.5692 MASADVEFRCFVGGLAWVTGNDALEKAFSIYGDIVESKVINDRETGRSRGFGFVTFASEQSMKDAIAGMNGQDLDGRNITVNEAQTRASRGGGGGGGFGSGGGYNRGSGGYGGGGGGGGYGGRREGGYNRNGGGGGGGYGGGRDRGYGGDGGSRYSRGGEGGGSDGNWRN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1005 170 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Gso11g1005 170 PANTHER GEO13361P1-RELATED 1 170 - -
Gso11g1005 170 MobiDBLite consensus disorder prediction 124 170 - -
Gso11g1005 170 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gso11g1005 170 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 170 - -
Gso11g1005 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gso11g1005 170 Gene3D - 2 121 IPR012677 -
Gso11g1005 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1005 Gso-Chr11 8969862 8970922 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1005 10 90 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 7.41e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1005 - K13195 gmx:100796704 177.563