Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1004 ATGTTATCCATGGCTTCTGCATATGTTGAGTACCGTTGCTTTGTTGGTGGGCTCGCTTGGGCCACAGACGATCATGCCTTGGAGAAAGCCTTCTCTCACTACGGCAACATCGTTGAATCGAAGATTATCAACGATCGTGAGACCGGAAGGTCCAGGGGATTTGGATTTGTTACCTTCGCCTCGGAGAATTCAATGAAGGATGCGATCGAAGGGATGAACGGTCAGAACCTTGACGGACGTAACATAACTGTGAACGAAGCTCAGTCCCGCGGCAGCCGCGGTGGATACGGTGGTCGTCGTGAAGGTGGATATAACCGTGGTGGTGGAGGCTATGGAGGGGGTGGTTATGGTGGTGACAGAGATTGTGGTTACGGTGACGGTGGTTCACGCTACTCTCGTGGTGGCGATGTCAATGGAAGCCGGAGAAACTAG 432 0.5255 MLSMASAYVEYRCFVGGLAWATDDHALEKAFSHYGNIVESKIINDRETGRSRGFGFVTFASENSMKDAIEGMNGQNLDGRNITVNEAQSRGSRGGYGGRREGGYNRGGGGYGGGGYGGDRDCGYGDGGSRYSRGGDVNGSRRN* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1004 143 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 4 136 - -
Gso11g1004 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Gso11g1004 143 PANTHER GEO13361P1-RELATED 4 136 - -
Gso11g1004 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 82 IPR000504 GO:0003723
Gso11g1004 143 Gene3D - 4 110 IPR012677 -
Gso11g1004 143 MobiDBLite consensus disorder prediction 72 143 - -
Gso11g1004 143 MobiDBLite consensus disorder prediction 76 90 - -
Gso11g1004 143 SUPERFAMILY RNA-binding domain, RBD 11 119 IPR035979 GO:0003676
Gso11g1004 143 SMART rrm1_1 12 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1004 Gso-Chr11 8962359 8963617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1004 14 93 Eukaryotic Initiation Factors Gene Family AT4G34110 37.500 5.27e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1004 - K13195 gmx:112998378 203.371