Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1003 ATGGCTTCTGCGGATGTTGAATACCGATGCTTTGTTGGTGGGCTCGCTTGGGCCACTGACAACTACGATCTGGAGAAAGCCTTCTCTCAGTACGGTGACGTCGTTGAATCGAAGATTATCAACGATCGTGAGACTGGAAGATCCAGGGGATTTGGATTTGTTACCTTCGCCTCCGAGGATTCAATGAGGGATGCGATCGAAGGGATGAACGGTCAGAACCTTGATGGACGCAACATCACTGTGAACGAAGCTCAGTCCCGCGGAAGCCGCGGTGGAGGCGGTGGCGGTTACGGAAGTGGCGGTGGATACAACCGCAGTGGTGGTGCTGGAGGATACGGTGGCCGTCGGGAAGGTGCATATAACCGTAACGGTGGTGGTTATGGCGGTGACAGAGACCATCGTTACGGACCTTACGGGGACGGTGGATCACGCTACTCTCGTGGTGGTGGTGATGGAAGCTGGAGAAATTAG 471 0.5478 MASADVEYRCFVGGLAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFASEDSMRDAIEGMNGQNLDGRNITVNEAQSRGSRGGGGGGYGSGGGYNRSGGAGGYGGRREGAYNRNGGGYGGDRDHRYGPYGDGGSRYSRGGGDGSWRN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1003 156 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 155 - -
Gso11g1003 156 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Gso11g1003 156 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gso11g1003 156 MobiDBLite consensus disorder prediction 73 87 - -
Gso11g1003 156 MobiDBLite consensus disorder prediction 68 156 - -
Gso11g1003 156 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Gso11g1003 156 Gene3D - 2 104 IPR012677 -
Gso11g1003 156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gso11g1003 156 PANTHER GEO13361P1-RELATED 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1003 Gso-Chr11 8960220 8961308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1003 10 90 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 1.24e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1003 - K13195 gmx:100305467 201.06