Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1002 ATGGCTTCTTCAGATGTTGAGTACCGTTGCTTTGTCGGTGGGCTCGCTTGGGCCACTGACGACCAAGCTCTCGAGAGAGCCTTCTCTCAGTACGGCGAAATCGTTGAAACGAAGATTATCAACGATCGTGAGACTGGAAGATCCAGGGGTTTTGGATTTGTGACCTTCGCCTCGGAGCAGTCCATGAAAGACGCCATCGAAGGGATGAACGGCCAAAACCTTGACGGCCGTAACATCACTGTTAACGAAGCTCAGTCCCGTGGTGGCGGTGGCGGCGGAGGCGGTGGAGGTGGTGGATATGGTGGTGGTCGCGGTGGTGGATATGGTGGTGGTGGTCGCGGTGGTGGAGGGGGATACAACCGTAGCGGTGGCGGTGGAGGCTATGGCGGCGGCGGTGGATATGGCGGTGGCGGTGGCGGTGGCTATGGCGGTGGCAGAGACCGTGGTTATGGTGGTGGTGGTGACCGTGGTTACTCTCGTGGTGGTGACGGTGGTGATGGAGGCTGGAGAAACTAG 516 0.5891 MASSDVEYRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIEGMNGQNLDGRNITVNEAQSRGGGGGGGGGGGGYGGGRGGGYGGGGRGGGGGYNRSGGGGGYGGGGGYGGGGGGGYGGGRDRGYGGGGDRGYSRGGDGGDGGWRN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1002 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Gso11g1002 171 PANTHER GEO13361P1-RELATED 1 171 - -
Gso11g1002 171 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 171 - -
Gso11g1002 171 MobiDBLite consensus disorder prediction 71 107 - -
Gso11g1002 171 Gene3D - 2 108 IPR012677 -
Gso11g1002 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Gso11g1002 171 SMART rrm1_1 9 82 IPR000504 GO:0003723
Gso11g1002 171 MobiDBLite consensus disorder prediction 136 171 - -
Gso11g1002 171 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1002 Gso-Chr11 8956935 8957973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1002 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 7.10e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1002 - K13195 gmx:100796543 174.481