Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1001 ATGGCCTCAAGCTCTCTCAGCAAACAAAAGGCTTCTGACTCCTCTTGGACGCCAAAACAGAACAAGCTGTTTGAAAAAGCACTTGCAAAATATGACAAGGATACCCCTGAGCGCTGGCAGAATGTAGCCAAAGCAGTAGGTGGAAAATCTGCAGATGAAGTTAAGAGACACTATGAAATCCTCTTGGAGGATCTCAGACACATAGAGTCTGGCCGTGTTCCTCTTCCCAAGTACAAGTCCACAGGAAGCAGCACCAATGTTGATGAAGAAGAGAGGCTTCTGAAGTATCTTAAACTGAATTGA 303 0.4488 MASSSLSKQKASDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSADEVKRHYEILLEDLRHIESGRVPLPKYKSTGSSTNVDEEERLLKYLKLN* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1001 100 CDD SANT 15 62 IPR001005 -
Gso11g1001 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Gso11g1001 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Gso11g1001 100 SMART sant 12 64 IPR001005 -
Gso11g1001 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Gso11g1001 100 PANTHER PROTEIN RADIALIS-LIKE 3 1 81 - -
Gso11g1001 100 Gene3D - 6 75 - -
Gso11g1001 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Gso11g1001 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1001 Gso-Chr11 8949671 8951759 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso11g1001 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1001 - - gmx:100798314 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0357 12 3152147 3154143 Gso11g1001 11 8949671 8951759 GST