Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1000 ATGTTGCATTGTCTCAACACTTCGGGGAATCTAGGAGCCACCTGTTCGGACATGACAGTGTTGGAAAGACAACGGGAAGCAACCATCAAGTGGCAGCAACACCTCCAGAACAACCAACCACCCTACTTAACGGACTTTAACGTTAACGTTAACGCCGTCTTCTCTTCTTCTTCTTCTTCTTCTCAGAGTCAGGGCCTGGTCATGAATATTTGCGCTGATTCCGCGCTCGGCGAGGTCCTAACTCACTCCGTCAAACCCGACCCGGGTGTCTGGCCCGAATTCGACGCCGGATTCGGATCCTCTTCCGGTTTTCTACCCACCATTTCGCCAACTTGTAGCAGAGGCGGAGACTTGGTTTCACCCAAGGAAAACATGGCCAGTGCGAAAGAAAACACTAAGAAGAGAAAACCTCAGAACTCCAAGGTTGTTGCGGCGAGTGATAATAAACAGGACAAGAGAGTCAAAGCAAGTGGTGAAGAAGGAGAATCCAAAGTAACAGAGCAAACCAGCAACAAGAATGGCAAATCCAACGCAAATAAAAACAACAACAGAGAAACAACCTCTGCGGAGACTTCCAAGGATAATTCGAAAGGCTCCGAGGTTCAAAATCAGAAGCCAGAGTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTTAGGAGGGAGAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACCTTGACGAACTATTTACCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATTGGGATGCCATTAGATATGAGTATGAGTAACAACCCTTCGTATCTACCATTTAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGACTAATAAACAACATGGGGATAAGCCCTCCAAACATGGGACTCCGAAGGAACATTAGTACTAGCCCTGTACCTTTGCCCGAAACGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAGATGGAGATGTAA 1263 0.4553 MLHCLNTSGNLGATCSDMTVLERQREATIKWQQHLQNNQPPYLTDFNVNVNAVFSSSSSSSQSQGLVMNICADSALGEVLTHSVKPDPGVWPEFDAGFGSSSGFLPTISPTCSRGGDLVSPKENMASAKENTKKRKPQNSKVVAASDNKQDKRVKASGEEGESKVTEQTSNKNGKSNANKNNNRETTSAETSKDNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNLDELFTKEVFPSCAQSFPNIGMPLDMSMSNNPSYLPFNSAQQLVSCCGGLINNMGISPPNMGLRRNISTSPVPLPETFLDSSCFTQILPSSNWEGGDFQSLYNVAFDQGRTASFPSQPFTGLVEASNLKMEM* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1000 420 MobiDBLite consensus disorder prediction 167 203 - -
Gso11g1000 420 CDD bHLH_AtBPE_like 207 292 - -
Gso11g1000 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 286 IPR036638 GO:0046983
Gso11g1000 420 MobiDBLite consensus disorder prediction 112 225 - -
Gso11g1000 420 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 120 401 - -
Gso11g1000 420 SMART finulus 223 273 IPR011598 GO:0046983
Gso11g1000 420 MobiDBLite consensus disorder prediction 207 225 - -
Gso11g1000 420 MobiDBLite consensus disorder prediction 146 166 - -
Gso11g1000 420 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 120 401 IPR024097 GO:0006355
Gso11g1000 420 Gene3D - 214 288 IPR036638 GO:0046983
Gso11g1000 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 267 IPR011598 GO:0046983
Gso11g1000 420 Pfam Helix-loop-helix DNA-binding domain 221 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1000 Gso-Chr11 8928850 8931953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1000 9 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.525 3.38e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g1000 HLH 2.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1000 - - gmx:100794256 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0356 12 3128291 3131218 Gso11g1000 11 8928850 8931953 GST