Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0983 ATGAAGGAAAAGAGAGACTTTTCTGAGTTTCTGTCAGAGTTAATAGTCCTGGCTGATGAGGTTGCTTTGTTTTCTAAGAATCCTGAAATTGATATAGAGGATGCTTTTACTGAGTTTGCTATGTTGGTTGAGAAATTTGCTCCAATCTTCAATGATCTGAGAGACAAATGCACAATCATAGACAAGCCAGCTATCAGAAAGTCCTTGGAATCTCTTATGAATGAGCTTACCCGAGCTAAAGCTTTGATCAGAAGCTCCTCTTTGAAAGAGCGCAACAAGCGAATTGAGGACATAGCGCATGATCTCGGTCGATCATTAGGCATGCTGCTTGTGGCCAGCCTTGAAGTGTCCATAGATTTTAGAGAAAAGATTGGCACATTGCAAAAACAGCTGATGAATGCGAGATTTGGTGGGAATATGAGTCCAACTTCAAGTTCGATATCAAGATTTGTCAATGAAGCGAAGGAGGGAGGGGAAATAGAAGAGGAGATAATTGATGTTACTAGTGATGATGTTTTACTACAGCTTAAGAATGGTGATGCCGAGGAATTTGCAGTTGCACTCTTAAGGCTAAAAAAGTTCATCAGGGGTGGAAAACTGGATAGCGGTTTAATTAATGTGGAAGCTGCTGTTTCCATTCTTTTTAACCGTCCATTTTCGTCTAAGGCAGGCAATAGGTTGACAATCATTCAATTGCTAAGAAGTATTGCTATGCGAAATGATGAGATGAAGGAGAAGATGACAAATATTGAGTTATTATCAGCAGTGGTGAAATCTCTTACAAGAGACACTGAAGAGAGGAGGGAAGCAGTGGGTCTGTTGCTAGAACTCTCTGCCCTTCCTGCAGTTAGACGGAAGATTGGGAGAATTCAGGGGTGTATTGTTATGTTAGTTTCTATCCTTAATGGAGTTGACCCTGTTTCTTCACGTGATGCAGCAAAGTTGTTGGATATACTATCAAATAATACTCAAAATGCACTTCTTATGGCCGAGGCTGGTTACTTTGGGCCGCTAGTGCAGTATTTGAATAAAGGTTGTGACATGACCAAGATTCTCATGGCAACAACACTTTCCAGGCTGGTGCTCACTGATCATAGCAAACTTACCCTTGGACAAGATGGGGCAATTGAGCCCCTTGTGAGAATGTTCAATTCTGGGAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAATCTTTCCAGCTTGACAGAAAATGTGCGGCGTTTGATTGGAACTGGAATTGTAGGATCTCTGCTGCAACTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTACGGGAGCCTGCATCAGCTATTCTTGCAAGAATTGCAGAGTCAGAAACTGTTCTTGTCAATCTAGGTGTGGCTCAGCAGATTCTCTCACTTTTGAATCTTTCCAGCCCTGTGATTCAAGGTCATCTATTAGAAGCTCTAAATAGCATTGCTTCCCTTCCTTGTGCTTCCAAAGAGAGAAGAAAAATGAAGGAAAAAGGTGCACTTCAACTAATTTTACCCCTTTTGAAGGAAACAAAAATGAAAATAAGGAGCAAGGCATTGAATTTGCTGTATACTCTCTCGGAAGATCTAACAGATGAGTCGACTGCACATTTTGATGAAACTCATCTTTTTTATATTGTTAACATTGTCTTATCATCAACATCAGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGTAACCTTCCTGTTAGTGATAAAAAAGTGACAGATGCACTGAAGAGAGCGAATTTGTTGCCGATTTTGGTATCCATTATGGATTTAGGCACAGGAAGTAACTCACCTGCAAAAAGTATCTTAATGGAGAGTATTGCAGGCATTGCAATCCGGTTCACAAGCTCCTCTGACAAGAAACTGCAACTTCTTTCAGCAAAACATGGGGTGATTGCTTTGCTTGTAAAACTGCTCTCAAGTGGTTCAGCAATCACAAAACTCAAAGCTGCAACCGCTCTCGGTCAACTATCGCAGAATTCTCCATCTCTTAGGCGGTCTAGGAAGTCGAGGTGGTTGTGTGTTGCTCCCTCAGTGGATGCATATTGTGAAGTTCATGATGGTTATTGCTTTGTTAGCAGCACGTTTTGTCTGATCAAGGCAGGTGCTGTTTCTCCCCTTATCCAAATATTGGAAGATAAGGATTGGGAAGCAGTGGAAGCCGCTTTGAATGCCCTTTCAACTCTATTGCAAGATGAAATCTGGGAAGGTGGTGCCAATTGCATAGCCAAATTGTCAGGTGTACAAGCTATTGTAAATGTATTAGAAGCAGGTGATGTGAAGGTTCAAGAAAAAGCGCTTTGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAATGAAATATGGAGAATTGGCACAGGTGGTTCTTATTGAAATGGCACAGAGGAGTGATTCTACATTGAAGTCAACAGTTGCAAAAGTTTTGGCAGTGCTGGAGCTGCTACTAGTTCAATCAAGTTATTTCTGA 2487 0.4129 MKEKRDFSEFLSELIVLADEVALFSKNPEIDIEDAFTEFAMLVEKFAPIFNDLRDKCTIIDKPAIRKSLESLMNELTRAKALIRSSSLKERNKRIEDIAHDLGRSLGMLLVASLEVSIDFREKIGTLQKQLMNARFGGNMSPTSSSISRFVNEAKEGGEIEEEIIDVTSDDVLLQLKNGDAEEFAVALLRLKKFIRGGKLDSGLINVEAAVSILFNRPFSSKAGNRLTIIQLLRSIAMRNDEMKEKMTNIELLSAVVKSLTRDTEERREAVGLLLELSALPAVRRKIGRIQGCIVMLVSILNGVDPVSSRDAAKLLDILSNNTQNALLMAEAGYFGPLVQYLNKGCDMTKILMATTLSRLVLTDHSKLTLGQDGAIEPLVRMFNSGKLESKLSALNALQNLSSLTENVRRLIGTGIVGSLLQLLFSVTSVLMTLREPASAILARIAESETVLVNLGVAQQILSLLNLSSPVIQGHLLEALNSIASLPCASKERRKMKEKGALQLILPLLKETKMKIRSKALNLLYTLSEDLTDESTAHFDETHLFYIVNIVLSSTSDSEKAAAVGILSNLPVSDKKVTDALKRANLLPILVSIMDLGTGSNSPAKSILMESIAGIAIRFTSSSDKKLQLLSAKHGVIALLVKLLSSGSAITKLKAATALGQLSQNSPSLRRSRKSRWLCVAPSVDAYCEVHDGYCFVSSTFCLIKAGAVSPLIQILEDKDWEAVEAALNALSTLLQDEIWEGGANCIAKLSGVQAIVNVLEAGDVKVQEKALWMLERIFRVEEHRMKYGELAQVVLIEMAQRSDSTLKSTVAKVLAVLELLLVQSSYF* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0983 828 SMART arm_5 240 279 IPR000225 GO:0005515
Gso11g0983 828 SMART arm_5 740 780 IPR000225 GO:0005515
Gso11g0983 828 SMART arm_5 489 529 IPR000225 GO:0005515
Gso11g0983 828 SMART arm_5 363 403 IPR000225 GO:0005515
Gso11g0983 828 SMART arm_5 696 736 IPR000225 GO:0005515
Gso11g0983 828 SMART arm_5 322 362 IPR000225 GO:0005515
Gso11g0983 828 SMART arm_5 445 485 IPR000225 GO:0005515
Gso11g0983 828 SMART arm_5 622 664 IPR000225 GO:0005515
Gso11g0983 828 Pfam Armadillo/beta-catenin-like repeat 364 403 IPR000225 GO:0005515
Gso11g0983 828 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 374 416 IPR000225 GO:0005515
Gso11g0983 828 Gene3D - 366 676 IPR011989 -
Gso11g0983 828 SUPERFAMILY ARM repeat 337 783 IPR016024 -
Gso11g0983 828 Gene3D - 693 822 IPR011989 -
Gso11g0983 828 Gene3D - 171 365 IPR011989 -
Gso11g0983 828 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 2 828 - -
Gso11g0983 828 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 828 - -
Gso11g0983 828 SUPERFAMILY ARM repeat 171 424 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0983 Gso-Chr11 8769333 8773445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0983 220 815 U-box Gene Family AT1G76390 28.861 1.09e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0983 K08332 - gmx:102664566 1520.37