Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0980 ATGAGAAGCTGTGTGCTTTACACGCTATTATTGTTTGTTTTCTGCATATGGGTTCCCATGGCAACGTGCTCTTCGTTCAGTGACATGGATGCGTTACTAAAGCTGAAGGAGTCCATGAAAGGAGACGAAGCCAAAGACGACGCACTCCATGACTGGAAGTTTTCCACATCGCATTCTGCACACTGTTTCTTTTCAGGCGTAACATGTGACCAAGACCTTCGAGTCGTTGCTATCAACGTCTCCTTTGTTCCTCTCTTCGGTCACATTCCGCCGGAGATCGGAAACTTGGACAAGCTGGAAAATCTCACAATCGTGAACAACAATCTAACCGGTGTACTCCCCATGGAGCTTGCCGCCCTCACTTCCCTCAAGCACCTCAACATATCTCACAACCTCTTCACCGGCGATTTCCCCGGCCAAGCCACTCTTCCGATGACGGAACTTCAAGTCCTCGACGTCTACGACAACAACTTCACCGGACCGCTTCCGGAAGAATTCGTGAAACTGGAGAAACTAAAATACCTGAAACTCGACGGAAACTATTTTACCGGCAGCATACCGGAGAGTTACTCGGAGTTTAAGAGCTTGGAGTTTTTGAGCTTAAACACCAACAGCTTATCGGGGAGGATTCCGAAGAGTTTGTCCAAGTTGAAGACTCTGAGGATTCTCAAACTCGGATACAGCAACGCTTACGAAGGTGGAATTCCTCCGGAGTTCGGCACCATGGAATCTCTGAGATTCCTCGACCTCTCAAGCTGCAACCTCAGCGGCGAGATTCCACCGAGTCTTGCAAATCTGACAAACCTAGACACGTTGTTCTTGCAAATGAACTTCCTCACCGGAAGCATTCCGTCTGAACTCTCTTCTTTGGTGAGGCTCATGGCACTGGATCTCTCCTGCAACAGCCTCACCGGGGAGATTCCAGAGAGCTTTTCTCAGCTGAGAAACCTCACTCTCATGAACTTGTTCCGCAACAATCTTCACGGCCCTATTCCGTCCTTGCTGAGCGAGCTTCCCAATCTGAATACGCTGCAGCTCTGGGAGAATAACTTCTCCTCTGAGCTCCCGCAGAACCTGGGGCAAAACGGGAGGCTGAAGTTCTTCGACGTCACGAAGAATCACTTCAGCGGGTTGATCCCTCGGGATTTGTGCAAGAGTGGGAGGTTACAAATCTTCATTATCACAGATAACTTCTTTCATGGCCCAATCCCTAACGAGATTGCTAACTGCAAGTCTCTAACCAAGATCCGAGCCTCCAATAACTACCTTAACGGCGCAGTTCCGTCGGGGATTTTCAAGCTACCTTCCGTCACGATAATCGAGTTGGCCAATAACCGTTTTAACGGAGAACTGCCTCCCGAAATTTCCGGCGATTCACTCGGGATTCTCACTCTTTCCAACAACTTATTCACTGGGAAAATTCCCCCAGCGTTGAAGAACTTAAGGGCACTGCAGACTCTGTCACTTGACACGAACGAGTTCCTTGGAGAAATCCCGGGGGAGGTTTTTGACCTACCAATGCTGACTGTGGTCAACATAAGCGGCAACAATCTCACCGGACCAATCCCAACGACGTTTACTCGCTGCGTTTCACTCGCCGCCGTTGATCTCAGCCGGAACATGCTAGTTGAGGATATTCCTAAGGGGATTAAGAACCTCACGGTCTTGAGCTTTTTCAATGTCTCGAGAAACCATTTAACAGGGCCAGTCCCTGACGAGATAAAATTCATGACGAGCCTCACCACGCTGGATCTCTCCTACAACAATTTCACAGGCAAGGTCCCCAACGAGGGTCAGTTTTTGGTCTTCAACGACAACTCGTTTGCAGGGAACCCTAACCTCTGTTCCATTCACGGATGCACTTTAAGCATTGTGGGGGCAGCTGCCCCTATCAACATTTTAACATTTGTAAATATAGTATGTACAATTATAGTAATTTATAAATTGCTTGTATAA 1956 0.4831 MRSCVLYTLLLFVFCIWVPMATCSSFSDMDALLKLKESMKGDEAKDDALHDWKFSTSHSAHCFFSGVTCDQDLRVVAINVSFVPLFGHIPPEIGNLDKLENLTIVNNNLTGVLPMELAALTSLKHLNISHNLFTGDFPGQATLPMTELQVLDVYDNNFTGPLPEEFVKLEKLKYLKLDGNYFTGSIPESYSEFKSLEFLSLNTNSLSGRIPKSLSKLKTLRILKLGYSNAYEGGIPPEFGTMESLRFLDLSSCNLSGEIPPSLANLTNLDTLFLQMNFLTGSIPSELSSLVRLMALDLSCNSLTGEIPESFSQLRNLTLMNLFRNNLHGPIPSLLSELPNLNTLQLWENNFSSELPQNLGQNGRLKFFDVTKNHFSGLIPRDLCKSGRLQIFIITDNFFHGPIPNEIANCKSLTKIRASNNYLNGAVPSGIFKLPSVTIIELANNRFNGELPPEISGDSLGILTLSNNLFTGKIPPALKNLRALQTLSLDTNEFLGEIPGEVFDLPMLTVVNISGNNLTGPIPTTFTRCVSLAAVDLSRNMLVEDIPKGIKNLTVLSFFNVSRNHLTGPVPDEIKFMTSLTTLDLSYNNFTGKVPNEGQFLVFNDNSFAGNPNLCSIHGCTLSIVGAAAPINILTFVNIVCTIIVIYKLLV* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0980 651 Pfam Leucine Rich repeat 121 135 IPR001611 GO:0005515
Gso11g0980 651 Pfam Leucine Rich repeat 578 592 IPR001611 GO:0005515
Gso11g0980 651 Gene3D Ribonuclease Inhibitor 335 623 IPR032675 -
Gso11g0980 651 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 8 628 - -
Gso11g0980 651 SMART LRR_typ_2 481 505 IPR003591 -
Gso11g0980 651 SMART LRR_typ_2 266 290 IPR003591 -
Gso11g0980 651 SMART LRR_typ_2 577 600 IPR003591 -
Gso11g0980 651 SMART LRR_typ_2 193 217 IPR003591 -
Gso11g0980 651 SMART LRR_typ_2 434 458 IPR003591 -
Gso11g0980 651 SMART LRR_typ_2 120 144 IPR003591 -
Gso11g0980 651 SMART LRR_typ_2 338 362 IPR003591 -
Gso11g0980 651 SMART LRR_typ_2 145 168 IPR003591 -
Gso11g0980 651 SMART LRR_typ_2 242 265 IPR003591 -
Gso11g0980 651 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515
Gso11g0980 651 Pfam Leucine rich repeat 268 327 IPR001611 GO:0005515
Gso11g0980 651 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Gso11g0980 651 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Gso11g0980 651 PANTHER UNNAMED PRODUCT 8 628 - -
Gso11g0980 651 Gene3D Ribonuclease Inhibitor 27 141 IPR032675 -
Gso11g0980 651 Gene3D Ribonuclease Inhibitor 230 334 IPR032675 -
Gso11g0980 651 Gene3D Ribonuclease Inhibitor 142 229 IPR032675 -
Gso11g0980 651 SUPERFAMILY RNI-like 78 400 - -
Gso11g0980 651 SUPERFAMILY L domain-like 379 618 - -
Gso11g0980 651 Pfam Leucine rich repeat N-terminal domain 27 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0980 Gso-Chr11 8755358 8757673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0980 23 618 Receptor kinase-like Gene Family AT1G75820 57.119 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0980 K00924 - gmx:102664073 1301.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0330 12 2932515 2936327 Gso11g0980 11 8755358 8757673 GST