Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0979 ATGAGAAGCTGTGTGTGTTACACGCTTTTATTGTTTGTTTTCTTCATATGGCTACACGTGGCAACGTGTTCTTCGTTCAGTGACATGGATGCGCTGCTGAAGCTGAAGGAGTCCATGAAGGGAGACAGAGCCAAAGACGACGCGCTCCATGACTGGAAGTTTTCCACGTCGCTTTCTGCACACTGTTTCTTTTCAGGTGTATCTTGCGACCAAGAACTTCGAGTTGTTGCTATCAACGTCTCCTTTGTTCCTCTCTTCGGCCACGTTCCGCCGGAGATCGGAGAATTGGACAAACTTGAAAACCTCACCATCTCGCAGAACAACCTCACCGGCGAACTTCCCAAGGAGCTCGCCGCCCTCACTTCCCTCAAGCACCTCAACATCTCTCACAACGTCTTCTCCGGCTATTTTCCCGGCAAAATAATTCTTCCGATGACCGAACTCGAGGTCCTCGACGTCTACGACAACAACTTCACCGGATCGCTTCCGGAAGAGTTCGTGAAACTGGAGAAATTGAAATACCTGAAGCTCGACGGAAACTATTTCTCCGGAAGCATACCGGAGAGTTACTCGGAGTTTAAGAGCTTGGAGTTTTTAAGCTTAAGCACCAATAGCTTATCGGGGAATATTCCGAAGAGTTTGTCTAAGTTGAAGACGCTGAGGATTCTCAAGCTCGGATACAACAACGCTTACGAAGGCGGAATTCCACCGGAGTTCGGCACCATGGAATCTCTGAAATACCTTGACCTCTCAAGCTGCAACCTCAGCGGCGAGATTCCACCGAGTCTAGCAAATATGAGAAACCTCGACACGTTGTTCTTGCAAATGAATAACCTCACCGGAACCATTCCGTCTGAGCTCTCCGACATGGTGAGCCTCATGTCACTGGATCTCTCCTTCAACGGCCTCACCGGGGAGATACCGACGCGCTTCTCTCAGCTGAAAAACCTCACTCTGATGAACTTCTTCCACAACAATCTCCGAGGCTCAGTTCCCTCCTTCGTCGGCGAGCTTCCTAATCTGGAAACGCTGCAGCTCTGGGAGAACAATTTCTCCTCTGAGCTCCCGCAGAACCTGGGGCAAAACGGGAAGTTCAAGTTCTTCGACGTCACGAAGAATCACTTCAGCGGGTTGATCCCTCGGGATTTGTGCAAGAGTGGGAGGTTACAAACGTTCTTGATCACAGATAACTTCTTCCATGGTCCAATCCCTAACGAGATTGCTAACTGCAAGTCTCTAACCAAGATCCGAGCCTCCAATAACTACCTTAACGGCGCAGTTCCGTCAGGGATTTTCAAGCTACCTTCCGTCACGATAATCGAGTTGGCCAATAACCGTTTTAACGGAGAACTGCCTCCCGAAATTTCCGGCGATTCACTCGGGATTCTCACTCTTTCCAACAACTTATTCACTGGGAAAATTCCCCCAGCGTTGAAGAACTTAAGGGCACTGCAGACTCTGTCACTTGACACGAACGAATTCCTTGGAGAAATCCCGGGGGAGGTTTTTGACCTACCAATGCTGACTGTGGTCAACATAAGCGGCAACAATCTCACCGGACCAATCCCAACGACGTTTACTCGCTGCGTTTCACTCGCCGCCGTTGATCTTAGCCGGAACATGCTTGACGGGGAGATTCCCAAGGGGATGAAAAACCTAACGGATTTAAGCATTTTCAATGTGTCGATAAACCAAATCTCAGGGTCAGTCCCAGACGAGATTCGCTTCATGTTGAGTCTCACCACGCTGGATCTCTCCTACAACAATTTCATCGGCAAGGTCCCTACCGGTGGTCAGTTTTTGGTCTTCAGCGACAAATCCTTTGCAGGGAACCCGAATCTCTGTAGTTCCCACTCTTGCCCTAATTCCTCGTTGAAGAAGAGACGCGGCCCTTGGAGTTTGAAATCGACGAGGGTGATCGTCATGGTGATTGCACTGGCCACTGCGGCGATTCTCGTGGCGGGGACGGAGTACATGAGGAGGAGGAGGAAGCTGAAGCTTGCGATGACGTGGAAGCTGACGGGGTTCCAGCGGCTGAACTTGAAAGCCGAGGAGGTGGTGGAGTGTCTAAAAGAAGAGAACATAATAGGAAAAGGAGGAGCAGGGATCGTGTACCGCGGGTCCATGAGAAACGGAAGCGACGTGGCAATAAAGCGGTTGGTTGGAGCGGGGAGTGGAAGGAACGATTACGGGTTCAAAGCGGAGATAGAGACGGTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTTTGGGTTACGTGTCGAACAAGGAGACGAACTTGCTTCTGTATGAGTACATGCCGAATGGGAGCTTAGGGGAGTGGCTGCATGGTGCCAAGGGAGGTCATTTAAAGTGGGAAATGAGGTACAAGATTGCGGTGGAAGCTGCAAAGGGACTATGCTATTTGCACCATGATTGTTCCCCTCTTATCATTCACAGGGATGTCAAGTCTAATAATATATTGCTCGATGCTCACTTTGAGGCTCATGTTGCTGATTTTGGCCTTGCCAAGTTCTTGTACGACCTTGGCTCCTCTCAGTCCATGTCCTCCATTGCTGGCTCCTACGGCTACATTGCTCCAGAGTATGCTTACACTTTGAAAGTGGACGAGAAAAGTGATGTGTACAGCTTTGGCGTGGTGCTGTTGGAACTGATAATAGGGAGGAAGCCAGTTGGTGAGTTTGGAGACGGGGTGGACATCGTTGGATGGGTCAACAAAACGAGATTGGAGCTCTCTCAGCCGTCGGATGCAGCAGTAGTGTTGGCAGTGGTGGACCCAAGGCTTAGTGGGTATCCATTGATAAGTGTCATTTACATGTTCAACATAGCTATGATGTGTGTTAAAGAAGTGGGGCCCACTAGGCCTACCATGAGGGAAGTAGTTCATATGCTCTCAAATCCTCCTCACTCTACCACTCACACTCACAACCTAATTAATCTCTAG 2946 0.4966 MRSCVCYTLLLFVFFIWLHVATCSSFSDMDALLKLKESMKGDRAKDDALHDWKFSTSLSAHCFFSGVSCDQELRVVAINVSFVPLFGHVPPEIGELDKLENLTISQNNLTGELPKELAALTSLKHLNISHNVFSGYFPGKIILPMTELEVLDVYDNNFTGSLPEEFVKLEKLKYLKLDGNYFSGSIPESYSEFKSLEFLSLSTNSLSGNIPKSLSKLKTLRILKLGYNNAYEGGIPPEFGTMESLKYLDLSSCNLSGEIPPSLANMRNLDTLFLQMNNLTGTIPSELSDMVSLMSLDLSFNGLTGEIPTRFSQLKNLTLMNFFHNNLRGSVPSFVGELPNLETLQLWENNFSSELPQNLGQNGKFKFFDVTKNHFSGLIPRDLCKSGRLQTFLITDNFFHGPIPNEIANCKSLTKIRASNNYLNGAVPSGIFKLPSVTIIELANNRFNGELPPEISGDSLGILTLSNNLFTGKIPPALKNLRALQTLSLDTNEFLGEIPGEVFDLPMLTVVNISGNNLTGPIPTTFTRCVSLAAVDLSRNMLDGEIPKGMKNLTDLSIFNVSINQISGSVPDEIRFMLSLTTLDLSYNNFIGKVPTGGQFLVFSDKSFAGNPNLCSSHSCPNSSLKKRRGPWSLKSTRVIVMVIALATAAILVAGTEYMRRRRKLKLAMTWKLTGFQRLNLKAEEVVECLKEENIIGKGGAGIVYRGSMRNGSDVAIKRLVGAGSGRNDYGFKAEIETVGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLKWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDAHFEAHVADFGLAKFLYDLGSSQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRLELSQPSDAAVVLAVVDPRLSGYPLISVIYMFNIAMMCVKEVGPTRPTMREVVHMLSNPPHSTTHTHNLINL* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0979 981 Pfam Leucine Rich repeat 579 592 IPR001611 GO:0005515
Gso11g0979 981 SUPERFAMILY Protein kinase-like (PK-like) 681 965 IPR011009 -
Gso11g0979 981 Gene3D Ribonuclease Inhibitor 142 229 IPR032675 -
Gso11g0979 981 Gene3D Ribonuclease Inhibitor 230 334 IPR032675 -
Gso11g0979 981 Pfam Leucine rich repeat N-terminal domain 27 70 IPR013210 -
Gso11g0979 981 SUPERFAMILY L domain-like 331 627 - -
Gso11g0979 981 Gene3D Phosphorylase Kinase; domain 1 657 766 - -
Gso11g0979 981 Gene3D Transferase(Phosphotransferase) domain 1 767 978 - -
Gso11g0979 981 SUPERFAMILY RNI-like 78 400 - -
Gso11g0979 981 PANTHER UNNAMED PRODUCT 5 972 - -
Gso11g0979 981 Pfam Leucine Rich Repeat 244 265 IPR001611 GO:0005515
Gso11g0979 981 Pfam Protein tyrosine and serine/threonine kinase 691 960 IPR001245 GO:0004672|GO:0006468
Gso11g0979 981 SMART LRR_typ_2 145 168 IPR003591 -
Gso11g0979 981 SMART LRR_typ_2 481 505 IPR003591 -
Gso11g0979 981 SMART LRR_typ_2 193 217 IPR003591 -
Gso11g0979 981 SMART LRR_typ_2 96 120 IPR003591 -
Gso11g0979 981 SMART LRR_typ_2 290 314 IPR003591 -
Gso11g0979 981 SMART LRR_typ_2 338 362 IPR003591 -
Gso11g0979 981 SMART LRR_typ_2 242 266 IPR003591 -
Gso11g0979 981 SMART LRR_typ_2 434 458 IPR003591 -
Gso11g0979 981 ProSiteProfiles Protein kinase domain profile. 690 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0979 981 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 5 972 - -
Gso11g0979 981 SMART serkin_6 690 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0979 981 Gene3D Ribonuclease Inhibitor 339 624 IPR032675 -
Gso11g0979 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Gso11g0979 981 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Gso11g0979 981 Gene3D Ribonuclease Inhibitor 27 141 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0979 Gso-Chr11 8747405 8750922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0979 23 974 Receptor kinase-like Gene Family AT1G75820 61.435 0.0 1202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso11g0979 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0979 K00924 - gmx:732661 1925.98