Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0971 ATGGCTTCCGACTCTTCTCCCCCGAATTTCAACAACGGACCTTCATCCCCCGATGACTCCCTTTCCAGCCCCATCGGCAATACCTTCTCGTCACCGGCCAGTAGACGCCGCCGCCGCTCCTCCACCCCCTCCGCATTCGCCACTCCGTCGGAGCGCCGCTCCCGATTCGCCTCCTCCGATGCCACCCCTACCGCGCCGCGCTCCCGCCAGAGAAGCGGCGGCGGGCGCGTTCCCGCCACTTCCACCTCCACCACCGACGACGTTCCGGCCTCTTCAGACGGCGGAGACGGCTTCGACATGGACGATGCCAGGCCCACCTTCGTGTGGGGCACCAACATAAGCGTGGAAGACGTGAACGACGCCATCAAAAGGTTTCTGAGGAACTTCAGAGACGCGTCTTCGTCGCAGGGTGGTGACAACGATGACGGGTTGCACTTGCACACAGAAGGGAAGTATGAGAAACTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTTGATGTTGATGCGCGTGACGTGTTTGATCATGACCCTGATTTGTACACTAAGATGGTTAGGTACCCTCTCGAGGTGCTTGCGATCTTTGACTTGGTTTTGATGAACATGGTTGGCGAATTGAAGCCTATGTTCGAGAAGCACATTCAGACCCGTATTTTCAATCTCAGAAACTCAACCTCTATGAGAAATTTGAACCCTTCTGATATTGAGAGAATGGTATCACTGAAGGGAATGGTTATAAGAAGCAGCTCAATCATTCCAGAGATCAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGAGCCAGTTCCTGTGGAGAGAGGGCGAATAACCGAACCCACTATATGTTTGAAGGAAGAGTGCCAATCCAGAAACTCCATGACACTTGTTCACAACCGATGCAGGTTTGCTGATAAGCAAATTGTGAGGGTCCAGGAGACACCTGATGAGATTCCGGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGTTGGTGGATACTGCAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGATTGGACCAACACAGAGAACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACCGATAAGTCCAGGATGTTGGTAGAGGATGCTATGGATGTTGATGGCCAAGACAAAAATGCAGAAGTTCTCTTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAACGGCCAGATATATATGAAATACTGACAAAGTCAATGGCCCCAAACATCTGGGAGCTAGATGATGTGAAAAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTAGCTTCTGGTGCTAACTTTCGTGGCGATATAAATATTCTTCTCGTTGGCGATCCTGGGACAAGCAAGTCCCAGCTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGTTCAGCTGTTGGATTGACTGCTTACGTAACCAAGGACCCCGAAACAGGAGAAACAGTTTTAGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATATGTTGTATTGACGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCAGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGATTTGATTTAATCTACTTGATGCTTGACAAGGCTGATGAACAGACTGACAGGCGCCTTGCTAAACATATTGTGTCCCTACACTTTGAGAATCCCGAGAACGTGGAACAGGACGTGTTGGACATTTCTACATTAACCGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAGCTTTCTGATGAAGCCGCTGAAGAATTGACTAGAGGTTACGTAGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACACCAAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTCGGATGCGCTTCTCAGAATGGGTTGAAAAGCATGATGTAATGGAGGCATTTCGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCATTCTACTGGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGTGAAAGAATGAGGCGAGAAAGTCTGCAACAAGCAACTCGTAACATAATCATGGAGAAAATGCAGATTGGGGGACCATCTATGCGCTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGATACTGGTAGCGAAGTTCATCTTAATGATCTAAGGAATGCAATTGCTACTCTGGCTACAGAAGGATTTGTTACCATGCACGGTGACATTGTAAAAAGATCTTGA 2508 0.4673 MASDSSPPNFNNGPSSPDDSLSSPIGNTFSSPASRRRRRSSTPSAFATPSERRSRFASSDATPTAPRSRQRSGGGRVPATSTSTTDDVPASSDGGDGFDMDDARPTFVWGTNISVEDVNDAIKRFLRNFRDASSSQGGDNDDGLHLHTEGKYEKLIRQVIEVEGDSLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVGELKPMFEKHIQTRIFNLRNSTSMRNLNPSDIERMVSLKGMVIRSSSIIPEIREAIFRCLVCGFCSEPVPVERGRITEPTICLKEECQSRNSMTLVHNRCRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDTAKPGDRVEVTGIYRAMSVRIGPTQRTVKSLFKTYIDCLHIKKTDKSRMLVEDAMDVDGQDKNAEVLFDEEKVAQLKELSKRPDIYEILTKSMAPNIWELDDVKKGLLCQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHFENPENVEQDVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLQQATRNIIMEKMQIGGPSMRLLELLEELKKQDTGSEVHLNDLRNAIATLATEGFVTMHGDIVKRS* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0971 835 MobiDBLite consensus disorder prediction 1 99 - -
Gso11g0971 835 Pfam MCM OB domain 228 357 IPR033762 -
Gso11g0971 835 ProSitePatterns MCM family signature. 534 542 IPR018525 GO:0003677|GO:0005524|GO:0006260
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 250 263 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 301 313 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 441 452 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 587 604 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 739 748 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso11g0971 835 SMART mcm 224 739 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 Pfam MCM N-terminal domain 121 224 IPR027925 -
Gso11g0971 835 Pfam MCM P-loop domain 413 635 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 76 834 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gso11g0971 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 436 751 IPR027417 -
Gso11g0971 835 CDD MCM4 428 737 - -
Gso11g0971 835 Gene3D - 228 367 IPR012340 -
Gso11g0971 835 Gene3D - 409 743 IPR027417 -
Gso11g0971 835 ProSiteProfiles MCM family domain profile. 425 631 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 MobiDBLite consensus disorder prediction 1 90 - -
Gso11g0971 835 Pfam MCM AAA-lid domain 651 737 IPR041562 -
Gso11g0971 835 SUPERFAMILY Nucleic acid-binding proteins 147 378 IPR012340 -
Gso11g0971 835 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 76 834 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 481 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 526 540 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 554 567 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 578 590 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 PRINTS Mini-chromosome maintenance (MCM) protein family signature 605 613 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gso11g0971 835 Gene3D - 744 831 IPR036388 -
Gso11g0971 835 Gene3D - 112 222 - -
Gso11g0971 835 Gene3D - 255 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0971 Gso-Chr11 8693959 8699267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0971 1 834 Core DNA Replication Machinery Family AT2G16440 73.598 0.0 1258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0971 K02212 - gmx:100782586 1588.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0323 12 2886507 2892201 Gso11g0971 11 8693959 8699267 GST