Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0970 TCATTTTTGAACTCATGTGAAGTGCTTTTATATATCGAGAGAGAGAGAGAGATTTATCGCTTTATTCTATACCCATCATCACTGAGAGCTAGAGTACTGCTCTTGCAGCAGATCACAGAGAAGGTCATCGTAAAGAGCGATCTTTCTTCAGTGGAAAAGTGTCCGGCCACGATGGAAGCCCAAGTAGTAAAGGGATCAAAGTGTGAAGACTGTGGGAACCAAGCGAAGAAGGATTGTGAATACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGCCTTTAAGTGCCAAACCCATATCCGAAGCACTTGGATTCCTGTAGATAGAAGGCGCCACCAGAAACTGGAGCACCAACCTCTCACTACTAATCTTAAGGCAGATACTATTCCTAAAAGGCACAAGCACAACCCATATTCAAGTTTAGAGGAGTTCAAATTTCCAGCTGTTATGAGTTCCATGGCGTTATTCAGCTGCGTTCAGGTGCGTTCCATGGATGACACGGTTAATGAAATTGCGTATCAAACATCTGTGAACATTGGAGGACATGTATTTAGTGGTCTTCTTTATGATCAAGGTCCTCAACAACAAAGCTTCAATGTTTCTAAGGGTGACAATAATAGCTCCATAGACCCTTTTGTTCAACAACACAGTCTCAATCTTAGGAGTAGTGCTTCAATTCACACTCGTAATGGTGCAAGTGCAAATATGCCTCCACTATCAGCCACTGCATCAGCTCAGGAACCATTTTTTCCTCCGCCACATCCATTTCCCTTAGCTTCCTTCAGACCTGATATGAGATACTTGTCACACCCTAAACCTTAA 819 0.4286 SFLNSCEVLLYIEREREIYRFILYPSSLRARVLLLQQITEKVIVKSDLSSVEKCPATMEAQVVKGSKCEDCGNQAKKDCEYSRCRTCCKNKAFKCQTHIRSTWIPVDRRRHQKLEHQPLTTNLKADTIPKRHKHNPYSSLEEFKFPAVMSSMALFSCVQVRSMDDTVNEIAYQTSVNIGGHVFSGLLYDQGPQQQSFNVSKGDNNSSIDPFVQQHSLNLRSSASIHTRNGASANMPPLSATASAQEPFFPPPHPFPLASFRPDMRYLSHPKP* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0970 272 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 51 261 IPR007818 GO:0003700|GO:0006355
Gso11g0970 272 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 144 192 IPR006511 -
Gso11g0970 272 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 67 109 IPR006510 -
Gso11g0970 272 Pfam Domain of unknown function (DUF702) 65 193 - -
Gso11g0970 272 PANTHER BNAC01G23660D PROTEIN 51 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0970 Gso-Chr11 8687139 8688768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0970 62 191 C2H2 Transcription Factor Family AT2G21400 55.147 1.06e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso11g0970 DUF702 2.1e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0970 - - gsj:114376985 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0322 12 2878262 2879484 Gso11g0970 11 8687139 8688768 GST