Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0966 ATGAAGATCCAGTGTGATGTGTGTCACAATGAAGTTGCTTCCTTTTTCTGCCCCTCTGATGAAGCCTCTCTCTGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCAGACAAACACAAACGCTTCTCCCTTCACCACCCCACTTCCAAAGACTCCCCTCTTTGTGATATCTGTCATGAGAGGCGTGCATATCTTTTTTGCAAAGAGGACAGAGCAATACTATGTAGAGAATGTGATCTTTCTATTCATGGGGTCAACGAACATACCAAGAAACACAACAGGTTTCTTCTCACTGGCGTAAAGATCGGTGCTGATGCTTCAGACCCAACATCACTTTCCTCAAATGACACTGCCATTGAAGAAAGAACAACCTCTAGTTCTAAAATAAACAGACCAATAAGTTCTTTGTCAAATGAGAATATCAGTTCTTCTCCCACGGTTGGAGACAACATGGCTTGTGACACGGGTTCGGTTTCAACTAGCAGCATTTCTGAGTACTTGATTCAGACCATTCCCGGTTACTGCATGGAAGATCTTTTAGATGCTTCATTTGCATCTAATGGTTTATCTAAGGATTATGAGCACCAATCAGCGTTTCAGAACCAAGATGTTCAAGTCAGCATGTGTTCGTTTCCACTGCAAAGTTGGGTACCACAATCTCAAGCTGGATCCCCTCAACTAATTAGCACTACCTCGAATCTTCATCCCCAGATTAATTCTTTAGTTGGAGTAATGGAAATGCCTAAAGCCAAAGCTAGTGAAGGATACTCCAATTGCATATATAATTATGACTACTCAGCTTACAAAGTTCCTTCAATTTGTCCTCCATTGATCAAAAAATGTAAACGCTCTCGTTAA 867 0.421 MKIQCDVCHNEVASFFCPSDEASLCHACDRTIHHANKLADKHKRFSLHHPTSKDSPLCDICHERRAYLFCKEDRAILCRECDLSIHGVNEHTKKHNRFLLTGVKIGADASDPTSLSSNDTAIEERTTSSSKINRPISSLSNENISSSPTVGDNMACDTGSVSTSSISEYLIQTIPGYCMEDLLDASFASNGLSKDYEHQSAFQNQDVQVSMCSFPLQSWVPQSQAGSPQLISTTSNLHPQINSLVGVMEMPKAKASEGYSNCIYNYDYSAYKVPSICPPLIKKCKRSR* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0966 288 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso11g0966 288 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gso11g0966 288 CDD Bbox1_BBX-like 57 100 - -
Gso11g0966 288 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 205 - -
Gso11g0966 288 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 205 - -
Gso11g0966 288 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gso11g0966 288 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Gso11g0966 288 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Gso11g0966 288 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso11g0966 288 CDD Bbox1_BBX-like 5 47 - -
Gso11g0966 288 MobiDBLite consensus disorder prediction 110 144 - -
Gso11g0966 288 Gene3D Classic Zinc Finger 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0966 Gso-Chr11 8656472 8658195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0966 1 288 C2C2-CO-like Transcription Factor Family AT1G75540 39.039 2.90e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso11g0966 zf-B_box 7.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0966 - - gmx:100790232 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0318 12 2853546 2854406 Gso11g0966 11 8656472 8658195 GST