Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0956 ATGGAAGTTGCGGCGGCGAAAGCGCTGAAACCAAGCTTGCGGACAGAGTTTATTTTCCCTCAAGCAATTTACGACGAGATTTTATGTTTTAACGCGAACAACGTTGTTGCCGATGAAGATTTCTCCATGGACGACTTACTTGACTTTTCCAACGGGGAATTCCAAGTTGGAAAAGACTTCGATGATTACGAGGAAGAGGAAGACGAGGAAAAAAACAGCACCTCCGGTTCCTTGCAGTCGCAGGACAGAGCCGAAGACGACAACAATTCTAATTCCACCGCTGGAGGCGGCGGCCACGACTATGTTTTCGCCGGCGAGTTGTCAGTTCCGGCAGATGATGTGGCAGACTTGGAATGGGTTTCTCACTTTGTGGATGATTCTCTCCCGGAGTTATCTATATTGTACCCCATTCATTGTTCCAAGAAAACAAGAGTATGGGCCGAACCGGAATCCAGATTGAGCCCGGCCCAAACCGTTTCAAAAGTCCCGAGAAAGTCGAGAACTGAAAAGCCTAGAAAGCCCAACACTCGTGTCTGGTCCTCTTTTACGGTGTTTGCTGGCTCCGTTGGGTTCGGCGAGTTGGTGACTAAGAAGCAGAAGAAAAAGGTTGAGGCCCAAAGCGGTGGGGCCCAGTCTCTGCGACGTTGTAGCCACTGCCAGGTGCAGAAAACACCGCAATGGAGGATCGGTCCACTAGGGCCCAAAACACTTTGCAACGCTTGCGGGGTTCGATTCAAGTCTGGTCGGCTTTTTCCAGAGTATAGACCGGCCTGTAGCCCGACCTTTTGTGGCCACATTCACTCTAACAACCATCGTAGAGTGTTGGAGATGAGATGGAAAAAACAGATAGCAGAATCCGTTACTGGTTCAGACCGGAAACAATTGATCCCAAATTATTAA 900 0.4933 MEVAAAKALKPSLRTEFIFPQAIYDEILCFNANNVVADEDFSMDDLLDFSNGEFQVGKDFDDYEEEEDEEKNSTSGSLQSQDRAEDDNNSNSTAGGGGHDYVFAGELSVPADDVADLEWVSHFVDDSLPELSILYPIHCSKKTRVWAEPESRLSPAQTVSKVPRKSRTEKPRKPNTRVWSSFTVFAGSVGFGELVTKKQKKKVEAQSGGAQSLRRCSHCQVQKTPQWRIGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFCGHIHSNNHRRVLEMRWKKQIAESVTGSDRKQLIPNY* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0956 299 PIRSF Txn_fac_GATA_plant 1 297 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gso11g0956 299 PANTHER GATA TRANSCRIPTION FACTOR 1 186 - -
Gso11g0956 299 PANTHER GATA TRANSCRIPTION FACTOR 190 299 - -
Gso11g0956 299 ProSiteProfiles GATA-type zinc finger domain profile. 210 246 IPR000679 GO:0006355|GO:0043565
Gso11g0956 299 MobiDBLite consensus disorder prediction 74 96 - -
Gso11g0956 299 MobiDBLite consensus disorder prediction 148 174 - -
Gso11g0956 299 SMART GATA_3 210 260 IPR000679 GO:0006355|GO:0043565
Gso11g0956 299 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Gso11g0956 299 Gene3D - 210 260 IPR013088 GO:0006355|GO:0008270
Gso11g0956 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 274 - -
Gso11g0956 299 MobiDBLite consensus disorder prediction 62 97 - -
Gso11g0956 299 CDD ZnF_GATA 215 272 IPR000679 GO:0006355|GO:0043565
Gso11g0956 299 PANTHER GATA TRANSCRIPTION FACTOR 1 186 - -
Gso11g0956 299 PANTHER GATA TRANSCRIPTION FACTOR 190 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0956 Gso-Chr11 8555281 8557191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0956 40 281 C2C2-Gata Transcription Factor Family AT4G36240 44.444 2.21e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso11g0956 GATA 6.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0956 - - gmx:100789689 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0313 12 2776461 2778400 Gso11g0956 11 8555281 8557191 GST