Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0946 ATGAACAACAGCAGTGGCGGAGGAGGACGAGGAACTTTGATGGGTTTGAGTAATGGGTATTGTGGGAGGTCGCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGCTTGCGGGTCTTCCTGTTCCTCTCGATCTCGTGTTCCCCATTCAGAACAGCTTCCACTCTACTATCTCGCTCTCGCACGCTTTCTTTCACCATCCCACGTTGAGTTACTGTTCCTTCTATGGGAAGAAGGTGGACCCTGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGCGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACTCACTCATCTTCAACTGTCACATCACTCACTGTCACTGGGGGTAGTGGTGCCAGCAAAGGAACTGTAAATTTCCAAAACCTTTCTACAAATACCTTTGGTAATCTCCAGGGTACCGATTCTGGAACTGACCACACCAATTATCATCTAGATTCCATTCCCTATGCGATTCCAAGTAAAGAATACAGGTATGTTCAAGGACTTAAATCTGAGGGTGGTGAGCACTGCTTTTTTTCTGAAGCTTCTGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTTGATGTCAACCAGAGTTGCCTCTTTTTCTACGTCAAAATCAAGTAATGATTCCCTGTTGCATAGTGATTATCCCCGGCATTCGTTTTTATCTGGTGAATATGTGTCGGGAGAACACGTAAAGGAGGAGGGCCAGCCTCTTCGACCTTTTTTTAATGAATGGCCTAAAAGCAGGGAGTCATGGTCTGGTCTAGAAGATGAGAGATCCAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCTATGTCTTCCAATTTCTCTGCAACGAGCTCTCAGTCCCCACATGGTGAAGATGAGATTCAATTTAGGTAA 1026 0.4678 MNNSSGGGGRGTLMGLSNGYCGRSPFTVSQWQELEHQALIFKYMLAGLPVPLDLVFPIQNSFHSTISLSHAFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTHSSSTVTSLTVTGGSGASKGTVNFQNLSTNTFGNLQGTDSGTDHTNYHLDSIPYAIPSKEYRYVQGLKSEGGEHCFFSEASGSNKVLQMESQLENTWPLMSTRVASFSTSKSSNDSLLHSDYPRHSFLSGEYVSGEHVKEEGQPLRPFFNEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSNFSATSSQSPHGEDEIQFR* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0946 341 PANTHER - 22 327 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso11g0946 341 SMART QLQ_2 24 60 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso11g0946 341 ProSiteProfiles QLQ domain profile. 25 60 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso11g0946 341 ProSiteProfiles WRC domain profile. 89 133 IPR014977 -
Gso11g0946 341 MobiDBLite consensus disorder prediction 321 341 - -
Gso11g0946 341 MobiDBLite consensus disorder prediction 130 149 - -
Gso11g0946 341 MobiDBLite consensus disorder prediction 121 149 - -
Gso11g0946 341 PANTHER GROWTH-REGULATING FACTOR 5 22 327 - -
Gso11g0946 341 Pfam QLQ 25 59 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso11g0946 341 Pfam WRC 90 132 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0946 Gso-Chr11 8484048 8488067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0946 12 132 GRF Transcription Factor Family AT3G13960 58.871 1.32e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso11g0946 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0946 - - gmx:100787567 668.692