Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0924 ATGATGGGAAGAACACCATTTGCATGCAGTAGTGATGAAAATGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTCAGAAACATGGGCATGGGAGTTGGAGAGCACTTCCAAAACTTGCAGGGTTGAACAGGTGTGGGAAGAGTTGCAGGCTAAGGTGGAGTAATTATTTGAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAACAGCAACTCATCATTAATTTACATTCAGTTCTTGGTAATAAGTGGTCGGCTATAGCAGGTCATCTGCCAGGTAGAACTGATAATGAAATTAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATCAGATCACCTTAATCTTCTATCTAATCTCCAACAGTTACTGGCTGCTACAAACATTGTGAGTAATATTCTCACAAACACTTGGGACAGTACTCATAATGCTCTAAGGCTACAATCAGATGCCAAACTCCAATTGCTGCAGAACATACTTCAAGTTCCTACCTCAAACTTGGACCTACTCAATCCATTTGGACCATCAGATGGTTTTCTAAATGAAGTTTTGGGGTTGAATCAGTCTAATAAGCTCCAAAACCTTTATAATAATGGTAGTTCAACTGATGGTTTTCCTTCTCAGAATCAGCCAAATATCCAAAGCTTTGAAGCCCCTCATCAGCAGCAAACTCTACCCAATGGAGGAAGCATTAATAGGAGTAGCATGAAATCTGAAAAGCTTGATGCGCCATATTCTTCTTCAACAGCATTCGTTAATTCTCTTCCAAATCTAGTTTCAGCCTCACCTGAATATTGTTCCACTCATGTCATGCAAATGGAAAACAAGGTAAATCCAAATGAGTTCTCTGACCCTTCTTCCACTTCAACCAACAACTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAAGCGATGCTTATTGGAAAGATCTCAAGATAGACCAAGAGTAG 1023 0.4008 MMGRTPFACSSDENGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWSNYLRPDIKRGKFSEEEQQLIINLHSVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSNLQQLLAATNIVSNILTNTWDSTHNALRLQSDAKLQLLQNILQVPTSNLDLLNPFGPSDGFLNEVLGLNQSNKLQNLYNNGSSTDGFPSQNQPNIQSFEAPHQQQTLPNGGSINRSSMKSEKLDAPYSSSTAFVNSLPNLVSASPEYCSTHVMQMENKVNPNEFSDPSSTSTNNFEMWGDFMYEEVSDAYWKDLKIDQE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0924 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Gso11g0924 340 SUPERFAMILY Homeodomain-like 15 112 IPR009057 -
Gso11g0924 340 CDD SANT 73 116 IPR001005 -
Gso11g0924 340 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g0924 340 CDD SANT 20 65 IPR001005 -
Gso11g0924 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 335 - -
Gso11g0924 340 SMART sant 70 118 IPR001005 -
Gso11g0924 340 SMART sant 17 67 IPR001005 -
Gso11g0924 340 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Gso11g0924 340 Gene3D - 73 120 - -
Gso11g0924 340 MobiDBLite consensus disorder prediction 242 262 - -
Gso11g0924 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Gso11g0924 340 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Gso11g0924 340 PANTHER MYB TRANSCRIPTION FACTOR 4 335 - -
Gso11g0924 340 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Gso11g0924 340 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Gso11g0924 340 Gene3D - 15 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0924 Gso-Chr11 8310599 8312399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0924 2 335 MYB Transcription Factor Family AT5G16770 48.718 1.84e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g0924 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0924 K09422 - gmx:100781707 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0144 12 1202089 1203877 Gso11g0924 11 8310599 8312399 GST