Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0890 ATGGCATCGGCGTTCGTCAAGCTCGATGATTCCCCTATGTTCCAGAGACAGTTATATTCTCTCGAAGAAACAACTGATGAGTTAACGGATCGGTGCCAGAAACTATATAAAGGGTGCAGGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATATCCTTTGCTGATTCATTAGAAGTATTTGGTGGCGGCCAAGATGACCCTGTCAGTGTATCAATTGGAGGGCCTGTGATATCTAAGTTTATTACCACACTGCGTGAGCTAACTTCTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACAGAGTTTATGAACGTTGATTTGCAAGATGCAAAGGATTCTCGCCGTCGTTTTGACAAAGCTGTGCATTCGTATGATCAGTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCGGAAGATGTTGTTGCTGAATTAGAAGAGGATCTACAAAACTCAAAATCAGCATTTGAGAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAACTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACATATGCACAGCAATCAAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGCTGGAGAATATACGAGCTTCTAGCAATTATATAGAAACCGTTCTAGGTTCTGATGGCACCCATGTTGTGGGTTTGAACTCTTACAGAAGTTTTGAAGCAGGGGTGCAACCTGCAACAACCAAAGGGGAGGTTCAAACAGTTAAACAGGGTTATCTGTTAAAACGATCATCAAGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATATTATTACAGAGTGAAGGGTGTCAAACCCATGGGCTCTCAGTCATATAATTATACTCGCTCGTCTGAACAAAACAGTGGCATGTTTGGTAGATTCCGTACAAGACACAATAGGGCCACATCTCTAAATGAGGATATTTTAGGTTCTTGTATGGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGATGATACAGATTTACGTCTTTGCTTCCGAATAATTTCTCCCTCAAAATCATACACACTACAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCGCTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATTTGGTAGAGTGCATTCACAGAATAAAAACTCAGCAGCTGGTGCTTCTTTGGCAAGTCAATCAGAGGATAGTCAGAAATCATTGAGGGATGGCATATATTCCAAGGAAGTGGTTAGTGTGTCAAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTGATCCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATGTCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAAAATACCGTTCTAGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTGTCTGGGAGGGCTTGCTTCTACTTGATCATGAAAGGTTAGGTGAATCAAATGTGCCTATGAAACCTTGCTCTACAGATGCCTTCCAACACAAGGAGAAGTACATCCAAGCAAAGTATGTAGAGAAATCACTGATCATCCGAGAAGAGGATATACCTGGGAATCCTTCAGTTTCCATAAGAATCTGGCAAGCAGTTCAGGCTGTAAATGTACGAGAAGTGTATCGCCTTATTGTCACATCAACATCAAATCTGATAAACACAAAGTATTATGATGAGTCTCACCATGCTGCTGATGCCAAAGGGCATCAGCATGATCCTGAAGCCTGTCTGAGAGTTGAAGAGACTACTGAGACAGAGAGGTGTTTCCGTGGATGGTCATTATTACATCTGGCATGTCATTCTGGCAGTGCACTGATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGTGTGACTATCATGAAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATCAATTGGCAAAGTTTCTATTAAGAAGGGGTGCAAGGCCGTCAGTTAAAGATGCCGGAGGACTCACTGTACTTGAAAGAGCAATGGAGAGGGGAGCAATAACTGACGAAGAACTATTTATCTTGCTTGCTGAATGCCAGTGA 2331 0.4118 MASAFVKLDDSPMFQRQLYSLEETTDELTDRCQKLYKGCRKFMTALGEAYNGEISFADSLEVFGGGQDDPVSVSIGGPVISKFITTLRELTSFKELLRSQVEHVLIDRLTEFMNVDLQDAKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDVVAELEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIRASSNYIETVLGSDGTHVVGLNSYRSFEAGVQPATTKGEVQTVKQGYLLKRSSSSRGDWKRRFFVLDNQGNLYYYRVKGVKPMGSQSYNYTRSSEQNSGMFGRFRTRHNRATSLNEDILGSCMVDLCTSTIKMDADDTDLRLCFRIISPSKSYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPQFGRVHSQNKNSAAGASLASQSEDSQKSLRDGIYSKEVVSVSKILRGIPGNDKCAECSAPDPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVRVWENTVLELFDNLGNAYCNSVWEGLLLLDHERLGESNVPMKPCSTDAFQHKEKYIQAKYVEKSLIIREEDIPGNPSVSIRIWQAVQAVNVREVYRLIVTSTSNLINTKYYDESHHAADAKGHQHDPEACLRVEETTETERCFRGWSLLHLACHSGSALMVELLLQFGADVNMCDYHERTPLHHCITSGKNQLAKFLLRRGARPSVKDAGGLTVLERAMERGAITDEELFILLAECQ* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0890 776 Pfam Ankyrin repeats (3 copies) 679 747 IPR002110 GO:0005515
Gso11g0890 776 SMART arf_gap_3 480 612 IPR001164 GO:0005096
Gso11g0890 776 SUPERFAMILY Ankyrin repeat 641 772 IPR036770 -
Gso11g0890 776 CDD ArfGap 484 599 - -
Gso11g0890 776 ProSiteProfiles Ankyrin repeat profile. 683 715 IPR002110 GO:0005515
Gso11g0890 776 CDD PH_ACAP 299 434 - -
Gso11g0890 776 SMART PH_update 297 432 IPR001849 -
Gso11g0890 776 SUPERFAMILY BAR/IMD domain-like 8 319 IPR027267 -
Gso11g0890 776 SUPERFAMILY ArfGap/RecO-like zinc finger 483 605 IPR037278 -
Gso11g0890 776 SUPERFAMILY PH domain-like 297 449 - -
Gso11g0890 776 PANTHER CENTAURIN/ARF 3 772 IPR045258 GO:0005096
Gso11g0890 776 Gene3D - 288 442 IPR011993 -
Gso11g0890 776 PRINTS HIV Rev interacting protein signature 492 511 IPR001164 GO:0005096
Gso11g0890 776 PRINTS HIV Rev interacting protein signature 511 528 IPR001164 GO:0005096
Gso11g0890 776 PRINTS HIV Rev interacting protein signature 534 555 IPR001164 GO:0005096
Gso11g0890 776 ProSiteProfiles Ankyrin repeat profile. 716 748 IPR002110 GO:0005515
Gso11g0890 776 SMART 5bar 1 220 IPR004148 GO:0005515|GO:0005737
Gso11g0890 776 Gene3D - 618 768 IPR036770 -
Gso11g0890 776 Pfam Putative GTPase activating protein for Arf 484 604 IPR001164 GO:0005096
Gso11g0890 776 ProSiteProfiles Ankyrin repeat region circular profile. 716 747 - -
Gso11g0890 776 ProSiteProfiles PH domain profile. 296 430 IPR001849 -
Gso11g0890 776 CDD BAR_SFC_plant 17 217 IPR035670 -
Gso11g0890 776 Pfam BAR domain of APPL family 8 230 - -
Gso11g0890 776 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 772 - -
Gso11g0890 776 Gene3D Arf GTPase activating protein 461 611 IPR038508 -
Gso11g0890 776 Coils Coil 229 249 - -
Gso11g0890 776 ProSiteProfiles ARF GTPase-activating proteins domain profile. 480 612 IPR001164 GO:0005096
Gso11g0890 776 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Gso11g0890 776 SMART ANK_2a 716 745 IPR002110 GO:0005515
Gso11g0890 776 SMART ANK_2a 683 712 IPR002110 GO:0005515
Gso11g0890 776 Pfam PH domain 298 429 IPR001849 -
Gso11g0890 776 ProSiteProfiles Ankyrin repeat region circular profile. 683 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0890 Gso-Chr11 7968601 7980610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0890 492 599 C2H2 Transcription Factor Family AT4G21160 40.367 1.59e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0890 K12489 - gmx:100796006 1549.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0249 12 2205126 2223781 Gso11g0890 11 7968601 7980610 GST