Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0885 ATGGTAGCGATCATGCAACAGCAGCAGCAGCATCAACAGCAACAGCAGAACCCCTCTGCACTGGTGCCACCTCAGCTCAAGAATCCCCAATCCTCCACCACAACCACCACCGCCACCACCACTCCCCTTAGGTCACCCTCCGCCCAGTCGCCGCTCTCCGTCGTCCAACCCATCCGGCAACCCCCACCCCCCTCTCATCCGGTGGTGCCGGTTACGACGGTGGAGCCCGGTCTGACGGCGGTGCCGACGTGTCCGCTGGTCAGAGTCCGGCTCTCGGACATTGCCCCCTATGACGGGGCACCAGGGGGACCCTATCTGAGAGCAATGGAGGCACTGTGTGGGTCTCTGTTGCGGCACAATGCTGCTTTGATCGAATTGGGGAACGAAGACACTGCTCTGATGCGATGCGGCTTGGAAGGTGCGAGGTTGTTCTTCAGAAGTAGGGCCCACCTTGGTTCTGGCAAGGGCAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTGGAGGATTGGGATTCTTCTCCCCCTTGCATGGCTGATATTTTCAGGTGCATGGGAAAGGCATCTCGATCCGCCTTGTGTGCCATTGCGAGGCATTTGCGTCTTAGAAGCGATGTTTTTAACCATTTGCTTGATGATGCTCCATTGCCTGCTAATGAGGTGTCTTCGTCGGTTCTTGTTGTGACCTACTCACATGCTTCTTTGCAAAATGGAAGGGGTGCCATTGGAGGCAGTAAGCCTACCATGAATGGTGAAGTTGAGAAGGGATTGTTGACGTTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGATCCCAGTGGTCGATGGTATCTGGCAGACAGTGGGTTTGGGCCTGGAGATCTTTTACTTATAACAGGCAAGGCACTTAGCCATGCTACTGCTGGCCTATGTCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTCTGAGTCCTAATGGTGGAGGAAGGTCTTCTCTTGCATATAGGCTCATGCCACAGGGCAATGCTATATTAGATTGTTCCCCAATTGCAGCAGCTGGCCATGTTATTCCCCAAAGCTATGTTCGAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCCGAAGAACTGATAGGCAGCAGATGTGATAATGCTGATGCTGCTGCTCAACACAATGTGAATAAGGAGCCATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTCATTGAAACGTCAAAATGTACTCTCTGCAATGTGGAAATTGAAACTGGTTCTTTGATCCCTAATCATGCTCTTAGAGCTGCAGCAGCTGCTGTCAAGCATGAGGATGATCGGAGGTTATTTCGTAATGCCGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGACCAAATGGATTCAATGAGAAGAGTGAATGGGGAAAATGGAGATTTTACTGCTGCCGATGGACTTCAGCGGGGAGTACAATATCCATTTTTGGTAAATGAGAAAGTTGTTATTAAGGGCAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTGTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGAAACTGGAGAGAATGTCCGCCTGCAGTACCGTTCTCTTAGGAAGCTCTTAAACTCACCAGCGGACCAGTGCCCCTCCCAGCCAATTCAAAATAGCAGCTCTTAA 1758 0.4989 MVAIMQQQQQHQQQQQNPSALVPPQLKNPQSSTTTTTATTTPLRSPSAQSPLSVVQPIRQPPPPSHPVVPVTTVEPGLTAVPTCPLVRVRLSDIAPYDGAPGGPYLRAMEALCGSLLRHNAALIELGNEDTALMRCGLEGARLFFRSRAHLGSGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRSALCAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVVTYSHASLQNGRGAIGGSKPTMNGEVEKGLLTLISSDTPGLQVCDPSGRWYLADSGFGPGDLLLITGKALSHATAGLCPAASYRASPDYFLSPNGGGRSSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVRISVSQFMDDLAAEELIGSRCDNADAAAQHNVNKEPSLRSVLSDPLSGTFLEDAMLVSCGHSFGGLMLRRVIETSKCTLCNVEIETGSLIPNHALRAAAAAVKHEDDRRLFRNAALRKRRKEMGDQMDSMRRVNGENGDFTAADGLQRGVQYPFLVNEKVVIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIETGENVRLQYRSLRKLLNSPADQCPSQPIQNSSS* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0885 585 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 81 583 - -
Gso11g0885 585 MobiDBLite consensus disorder prediction 1 67 - -
Gso11g0885 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 477 IPR013083 -
Gso11g0885 585 SUPERFAMILY beta-sandwich domain of Sec23/24 6 76 - -
Gso11g0885 585 Gene3D - 151 371 IPR027443 -
Gso11g0885 585 MobiDBLite consensus disorder prediction 1 55 - -
Gso11g0885 585 SUPERFAMILY RING/U-box 396 462 - -
Gso11g0885 585 SUPERFAMILY Clavaminate synthase-like 178 345 - -
Gso11g0885 585 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 81 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0885 Gso-Chr11 7934719 7942840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0885 396 582 Plant U-box Gene Family AT5G05230 40.000 1.51e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0885 - - gmx:100794424 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0245 12 2167899 2177769 Gso11g0885 11 7934719 7942840 GST