Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0883 ATGAGCTCTCGGGCAGGCAAGGGACCTGCTATCAGAAGTTACCGGCGGAGAAAGACAGCTTTGGACCTTGACCTTAACCGTTTACCGGCTGGTGAGAATCGTGAGCAGGAGGGACCTTCAACTCAGGCGGTGCCTCAAGAAATTCAACTTGAACAGCAGCCACAGGTTACTCAACCTCCGATGATTGACGTGGAAGCCATTGATGATGATGTTGTTGAATGTACCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCAAGAAGAATTCGTAGGAGGACTGTAGTTGATATTGATCTAGAAGATCAGACTAGGCGCAACAAACGCCGAAGAGAATTGCCAAATCTGATTATTAATTGTGATAAGTATATAAATTTGGAAGGCAGTAGCAGTTCCATGGGGGGAAGTGTTAAAAAGACACCCGAACCTCCAAAGGAGCTTGTCTTCAACTGTCCAATATGTATGGGCCCTATGGTACATGAAATGTCAACAAGATGTGGTCATATTTTTTGCAAGGATTGCATCAAGGCTGCTATAAGTGCTCAGGGTAAATGCCCTACCTGTAGAAAAAAGGTTGTTGCGAAAGATCTTATAAGGGTGTATCTCCCATCAACTAGTTGA 618 0.445 MSSRAGKGPAIRSYRRRKTALDLDLNRLPAGENREQEGPSTQAVPQEIQLEQQPQVTQPPMIDVEAIDDDVVECTPRAFAEAKNNSRRIRRRTVVDIDLEDQTRRNKRRRELPNLIINCDKYINLEGSSSSMGGSVKKTPEPPKELVFNCPICMGPMVHEMSTRCGHIFCKDCIKAAISAQGKCPTCRKKVVAKDLIRVYLPSTS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0883 205 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Gso11g0883 205 SUPERFAMILY RING/U-box 149 194 - -
Gso11g0883 205 SMART ring_2 150 187 IPR001841 -
Gso11g0883 205 Pfam Zinc finger, C3HC4 type (RING finger) 149 187 - -
Gso11g0883 205 MobiDBLite consensus disorder prediction 1 48 - -
Gso11g0883 205 MobiDBLite consensus disorder prediction 15 31 - -
Gso11g0883 205 PANTHER ELFLESS, ISOFORM B 2 205 - -
Gso11g0883 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
Gso11g0883 205 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0883 Gso-Chr11 7921233 7926091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0883 12 204 C3H Transcription Factor Family AT5G48655 50.000 6.72e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0883 K22651 - gmx:100792853 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0243 12 2150466 2158115 Gso11g0883 11 7921233 7926091 GST