Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0882 ATGGCTCCCAAACGAGGTGGAAAGGCTCCGGCTCTTGCCGCTAAGAAGAAGCCTGAGAAGGTCACGAATCCGTTGTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGGGCGTTGCCTCCGAAGAGAGACTTGACTAGGTTCGTGAAGTGGCCAAAGAATGTTCAAATTCAGAGGAAGAAGAGGATTCTGAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACTCTTGACAAAAACCTAGCAACAAGTCTGTTCAAGTTGCTTCTGAAGTACAGGCCCGAGGACAAAGCTGAAAAGAAGGAGAGGCTCTTGAAAAGGGCTCAGGCAGAGGCTGAAGGCAAAACTGTTGAAGCTAAGAAGCCTATTGTTGTGAAGTATGGTCTCAACCATGTTACCTACCTCATCGAGCAGAACAAAGCACAGCTCGTTGTGATTGCTCACGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCTGCTTTGTGCAGGAAGATGGAAATTCCGTACTGTATTGTGAAGGGAAAGGCCCGCTTGGGAACGGTTGTCCACAAGAAAACTGCATCCGTTTTGTGTTTGACCACTGTTAAGAATGAAGATAAATTGGAGTTCAGCAGAGTTTTGGAGGCTATCAAGGCTAACTTCAACGACAAATATGACGAGTACAGAAAGAAGTGGGGTGGTGGGATCATGGGATCCAAATCCCAAGCGAAAACCAGAGCAAAGGAGAAGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGACTTAG 780 0.4769 MAPKRGGKAPALAAKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKLLLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMT* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0882 259 Gene3D - 51 234 IPR029064 -
Gso11g0882 259 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Gso11g0882 259 PRINTS Ribosomal protein L7A/RS6 family signature 148 161 IPR018492 -
Gso11g0882 259 PRINTS Ribosomal protein L7A/RS6 family signature 164 174 IPR018492 -
Gso11g0882 259 PRINTS Ribosomal protein L7A/RS6 family signature 174 188 IPR018492 -
Gso11g0882 259 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 257 - -
Gso11g0882 259 Coils Coil 102 122 - -
Gso11g0882 259 SUPERFAMILY L30e-like 89 230 IPR029064 -
Gso11g0882 259 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Gso11g0882 259 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Gso11g0882 259 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Gso11g0882 259 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Gso11g0882 259 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Gso11g0882 259 PRINTS Ribosomal protein L7A family signature 186 210 IPR001921 -
Gso11g0882 259 PRINTS Ribosomal protein L7A family signature 218 238 IPR001921 -
Gso11g0882 259 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 116 206 IPR004038 -
Gso11g0882 259 PANTHER BNAA03G47020D PROTEIN 2 257 - -
Gso11g0882 259 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g0882 259 ProSitePatterns Ribosomal protein L7Ae signature. 167 184 IPR004037 GO:0042254|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0882 Gso-Chr11 7914543 7916593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0882 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.328 8.56e-168 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0882 K02936 - gmx:100792324 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0242 12 2143405 2145465 Gso11g0882 11 7914543 7916593 GST