LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g0847	ATGGAAGAGCACTCTTCTATTGGCCCTGGTTGTTCCTCAATTGGTTATGGAGAAGCAGAGGAGCTAGGACCCTTCTTTCCTCAGGACAGCAGCCAACCAAAGCTAAAGTTGAACCCTTATTCTTGGAATAAAGCTGCCAATCTTTTGTTTTTGGAATCCCCTGTTGGAGTTGGGTTCTCCTACACCAACACCAGCAATGATATAAGTGAACTTGGTGACACCATTACTGCTAAAGATTCACACACCTTTATCGTCAAGTGGTTTAGAAGATTTCCACAATTCAGATCAAACAAATTCTACATTTCCGGTGAAAGCTATGCAGGGCACTATGTTCCGCAACTTTCAGAGCTCATTTTCGATAATAATCGCAATCATGCCAAGAAAGACTACATTAACTTCAAAGGATTCATGATTGGAAATGCATTGTTGGACGACGAAACAGATCAAAAGGGTATGATAGATTACGCGTGGAATCATGCTGTGATATCTGATGGAGTATACCATAACATTACAACCAAATGCAATTTCAGCCTTCCAGATTCAACAGATGACTGCATTGATCAACTCAATAAGTACTTCGATGTATATAGCATTATTGATATGTATAGCTTGTACACTCCCAAGTGTTTCAGCAACAACGGCAACACCATAAAGAAATTAGCCCATGTCCTCAGAGGCAGAGCCCCTCAAACTTTTTCCAAAATTGTGAGCTTAATTTCTACTAATGGGTGGCACAGAAAACCAGCTGGATATGATCCTTGTGCATCCGATTATACTGAAGTGTACCTAAATAGGCCAGAAGTCCAAAAGGCATTACATGCCAATGTCACCAAAATTCCCTATTCCTGGACTCACTGCAGCGATACTATCACATTTTGGAATGACGCACCACAGTCCATGCTTCCTGTCATCAAGAAGCTTATTGCTGGTGGTATTCGCATTTGGGTTTACAGTGGAGATACCGATGGAAGAATTCCCGTGACTTCAACAAGATACACTCTTAGAAAGTTGGGGCTTGGGATCGTCGAAGATTGGACTCCCTGGTATACCAGCAAGCAGGTGGGAGGATGGACCATTGCTTACGATGGACTTACTTTTGTTACCATAAGAGGTGCTGGTCATCAAGTTCCTACTTTCACACCCAAGCAAGCTCTGCAGTTGGTTCGACACTTCCTAGCAAATAAGAAATTACCATCTCAACCAATTTAA	1209	0.4202	MEEHSSIGPGCSSIGYGEAEELGPFFPQDSSQPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTSNDISELGDTITAKDSHTFIVKWFRRFPQFRSNKFYISGESYAGHYVPQLSELIFDNNRNHAKKDYINFKGFMIGNALLDDETDQKGMIDYAWNHAVISDGVYHNITTKCNFSLPDSTDDCIDQLNKYFDVYSIIDMYSLYTPKCFSNNGNTIKKLAHVLRGRAPQTFSKIVSLISTNGWHRKPAGYDPCASDYTEVYLNRPEVQKALHANVTKIPYSWTHCSDTITFWNDAPQSMLPVIKKLIAGGIRIWVYSGDTDGRIPVTSTRYTLRKLGLGIVEDWTPWYTSKQVGGWTIAYDGLTFVTIRGAGHQVPTFTPKQALQLVRHFLANKKLPSQPI*	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g0847	402	Pfam	Serine carboxypeptidase	8	394	IPR001563	GO:0004185\|GO:0006508
	Gso11g0847	402	ProSitePatterns	Serine carboxypeptidases, serine active site.	101	108	IPR018202	GO:0004185
	Gso11g0847	402	Gene3D	alpha/beta hydrolase	6	211	IPR029058	-
	Gso11g0847	402	Gene3D	-	254	291	-	-
	Gso11g0847	402	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	8	401	IPR001563	GO:0004185\|GO:0006508
	Gso11g0847	402	SUPERFAMILY	alpha/beta-Hydrolases	8	397	IPR029058	-
	Gso11g0847	402	PANTHER	CARBOXYPEPTIDASE	8	401	-	-
	Gso11g0847	402	ProSitePatterns	Serine carboxypeptidases, histidine active site.	364	381	IPR033124	GO:0004185
	Gso11g0847	402	PRINTS	Carboxypeptidase C serine protease (S10) family signature	38	50	IPR001563	GO:0004185\|GO:0006508
	Gso11g0847	402	PRINTS	Carboxypeptidase C serine protease (S10) family signature	51	61	IPR001563	GO:0004185\|GO:0006508
	Gso11g0847	402	PRINTS	Carboxypeptidase C serine protease (S10) family signature	87	112	IPR001563	GO:0004185\|GO:0006508
	Gso11g0847	402	PRINTS	Carboxypeptidase C serine protease (S10) family signature	364	377	IPR001563	GO:0004185\|GO:0006508
	Gso11g0847	402	Gene3D	-	300	393	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g0847	Gso-Chr11	7579737	7583922	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g0847	262	397	Calmodulin-binding Proteins	AT2G22960	28.467	4.01e-14	68.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g0847	K16297		-	gmx:100807887	843.573