Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0828 ATGGAAGCCATATTCGTCACCAAACCCGCTTCCCATTCTCTCCTCTTAACTAAACTCTCTCCGAATCCCAAACACTTGTTCCCTCCACACCAACAATCCTTTCACAACATCCGCCACAAACCCACGCGCTTCCGCCCCGTCATCGCTGTTTTCCAAAACCAACATCAACAAGATGCAGCTGCAGCTTCCAACCACACCGAAGATGAGTCCTACGGCGAAGTCAAAGGCATCATTGGAAGCAGAGCCTTGGAAGCCGCCACCGGAATGGAGTACCTCATCGAGTGGAACGACGGCCACGCGCCGTCCTGGGTTCCCGCCGACTTCATAGCCAAAGACGTCGTCGCCGAGTACGAAACTCCCTGGTGGACTGCCGCCAAGAAAGCCGACGAGTCCGCGTTGAAAAACTTAATCGAATCCGACGACGGCCGCGACGTCGACGCCGTTGACGCCGACGGCCGCACTGCGCTCCTCTTCGTCGCCGGACTCGGCTCGGAGTCCTGCGTGAAGCTGCTAGCGGAGGCCGGCGCTAATCTGGACCACCGAGACCGGAGCGGCGGCCTCGCGGCTCTGCACATGGCGGCGGGGTACGTCAGGCCCGGCGTGGCGAAGGTTCTCTTGGATCTCGGCGCGGATCCCGAGGTGGCGGACGACCGCGGGAGAACGGCGTTGGATCTGGCGAGGGAGATTCTGAAGGTGACGCCGAAGGGGAATCCGATGCAGTTCGGACGCAGGATTGGACTGGAAGGTGTGATTAGGGTTTTGGAAGGGGCAGTGTTCGAGTACGCGGAGGTGCAGGAGATTCTGGAACGGAGAGGAAAGGGTGAGAATTTGGAGTATCTTGTGCGGTGGAAGGACGGTGGTGCCAACGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATTTGGTGAAAGACTACGAGGCTGGCCTCGAGTACGCCGTCGCTGAGGCGGTGCTCGCGAAAAGGGTAGCGGATGAAGGGACGCCGGAGTTTTTGGTTAAATGGGCCGATTTGGAGGAGCCCACATGGGAGCCCGAGGAGAATGTGGACCCAGAGCTTGTCAAAGCTTTCGAGGGAAGTAACAACCAGGCCCAGCCCAGTAGTAATGGGCCCGCTGTGGTCTTTTCCAATCAGGATAGCCCTAGCCTGTGA 1149 0.5901 MEAIFVTKPASHSLLLTKLSPNPKHLFPPHQQSFHNIRHKPTRFRPVIAVFQNQHQQDAAAASNHTEDESYGEVKGIIGSRALEAATGMEYLIEWNDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESALKNLIESDDGRDVDAVDADGRTALLFVAGLGSESCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKVTPKGNPMQFGRRIGLEGVIRVLEGAVFEYAEVQEILERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVKDYEAGLEYAVAEAVLAKRVADEGTPEFLVKWADLEEPTWEPEENVDPELVKAFEGSNNQAQPSSNGPAVVFSNQDSPSL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0828 382 Pfam Ankyrin repeats (many copies) 171 226 IPR002110 GO:0005515
Gso11g0828 382 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 1 363 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Gso11g0828 382 SUPERFAMILY Chromo domain-like 68 121 IPR016197 -
Gso11g0828 382 MobiDBLite consensus disorder prediction 357 382 - -
Gso11g0828 382 Gene3D - 68 115 - -
Gso11g0828 382 Gene3D - 258 307 - -
Gso11g0828 382 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Gso11g0828 382 Pfam Chromo (CHRromatin Organisation MOdifier) domain 314 357 IPR023780 -
Gso11g0828 382 ProSiteProfiles Chromo and chromo shadow domain profile. 312 368 IPR000953 -
Gso11g0828 382 SMART chromo_7 311 361 IPR000953 -
Gso11g0828 382 SMART chromo_7 70 122 IPR000953 -
Gso11g0828 382 SMART chromo_7 260 310 IPR000953 -
Gso11g0828 382 SMART ANK_2a 185 214 IPR002110 GO:0005515
Gso11g0828 382 SMART ANK_2a 116 147 IPR002110 GO:0005515
Gso11g0828 382 SMART ANK_2a 151 180 IPR002110 GO:0005515
Gso11g0828 382 ProSiteProfiles Ankyrin repeat profile. 185 217 IPR002110 GO:0005515
Gso11g0828 382 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Gso11g0828 382 Gene3D - 116 257 IPR036770 -
Gso11g0828 382 CDD CD3_cpSRP43_like 309 357 - -
Gso11g0828 382 CDD CD2_cpSRP43_like 260 307 - -
Gso11g0828 382 ProSiteProfiles Ankyrin repeat region circular profile. 185 217 - -
Gso11g0828 382 SUPERFAMILY Chromo domain-like 310 358 IPR016197 -
Gso11g0828 382 SUPERFAMILY Ankyrin repeat 117 228 IPR036770 -
Gso11g0828 382 MobiDBLite consensus disorder prediction 341 382 - -
Gso11g0828 382 Gene3D - 308 359 - -
Gso11g0828 382 PANTHER HOMEOBOX PROTEIN WARIAI 1 363 - -
Gso11g0828 382 SUPERFAMILY Chromo domain-like 260 308 IPR016197 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0828 139 226 CAMTA Transcription Factor Family AT5G09410 38.298 8.17e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0828 K12271 - gmx:100818382 747.273