Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0823 ATGGCTTTCTTTATTCTCTCCTTCCTCTTCCTTCTTCTTGTTTCATCTGCCACTGCTTGTGATCGCTGCTTGTATCAATCCAAGGCTTCCTATTTCTCCAAAGCTTCTGCTCTTTCATCTGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACACCTTGCAGCTGGTGTGGATTCTCTCTTCAAAAATGGAGCAGGTTGTGGTGCCTGCTTTCAGATAAGATGCAAGAACCCAACTCTATGTAGCAAAGAAGGTACCAAAGTGGTATTGACTGATCTTAATCACAACAATCAAACTGATTTTGTGCTAAGCAGCAGAGCCTTTGCGGGCATGGCTCAAAAGGGTATGGGCCAACAAATACTGAAGCTTGGCATTGCTGAAATTGAATACAAGAGAGTACCTTGTGATTACAAAAATCAGAATTTGGCCGTTCGAGTTGAAGAATCAAGCAAGAAGCCTGATTACTTGGCAATTAAATTTTTGTATCAAGGGGGACAAACAGAGATAGTAGCCGTTGATGTGGCTCAGGTTGGGTCTTCAAACTGGAGCTTCATGAGCAGAAACCACGGGGCAGTATGGGACACAAGCAGGGTACCCCAAGGCGCATTGCAATTTAGGTTAGTGGTAACGGCAGGGTATGATGGCAAGTGGATTTGGGCAAAGAAGGTCCTACCTGCTGATTGGAAAAATGGACTTATATATGATTCTGGCCTTCAGATTACTGACATTGCACAAGAGGCTTGTTCCCCCTGCGATGATGGGACATGA 780 0.45 MAFFILSFLFLLLVSSATACDRCLYQSKASYFSKASALSSGACGYGSLALDISGGHLAAGVDSLFKNGAGCGACFQIRCKNPTLCSKEGTKVVLTDLNHNNQTDFVLSSRAFAGMAQKGMGQQILKLGIAEIEYKRVPCDYKNQNLAVRVEESSKKPDYLAIKFLYQGGQTEIVAVDVAQVGSSNWSFMSRNHGAVWDTSRVPQGALQFRLVVTAGYDGKWIWAKKVLPADWKNGLIYDSGLQITDIAQEACSPCDDGT* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0823 259 PRINTS Major pollen allergen Lol pI signature 59 70 IPR005795 GO:0005576|GO:0019953
Gso11g0823 259 PRINTS Major pollen allergen Lol pI signature 79 89 IPR005795 GO:0005576|GO:0019953
Gso11g0823 259 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Gso11g0823 259 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Gso11g0823 259 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Gso11g0823 259 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Gso11g0823 259 SUPERFAMILY Barwin-like endoglucanases 10 143 IPR036908 -
Gso11g0823 259 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Gso11g0823 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Gso11g0823 259 PANTHER EXPANSIN-LIKE A1-RELATED 6 257 - -
Gso11g0823 259 Gene3D - 141 245 IPR036749 -
Gso11g0823 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Gso11g0823 259 Gene3D - 13 140 IPR036908 -
Gso11g0823 259 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Gso11g0823 259 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Gso11g0823 259 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Gso11g0823 259 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Gso11g0823 259 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Gso11g0823 259 PANTHER EXPANSIN-B3 6 257 - -
Gso11g0823 259 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Gso11g0823 259 Pfam Lytic transglycolase 58 134 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0823 Gso-Chr11 7412086 7414327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0823 17 257 Expansin Gene Family AT4G38400 67.490 4.00e-113 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0823 - - gmx:100305884 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0198 12 1677620 1679462 Gso11g0823 11 7412086 7414327 GST