Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0816 ATGGGATTTATGTTGCAAGAAGGATCGTCTTCTGTAAATTCTTCACCCCTGCAGTTCTTCTCCATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATCTCTTGTTTAGGGAAATGAAATCCGAGGAAAGGGGTTTATACTTGATCCATTTGTTGCTCACTTGTGCAAACCATGTAGCTGCTGGTAACCTTGAAAATGCAAACACCACACTTGAGCAAATTTCCCTGCTTGCTTCCCCTGATGGGGACACTATGCAGCGAATCGCGACATATTTTATGGAATCGCTTGCTGATCGGATTCTTAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCGACCAGAATTACTTTGCTATCCGACGAAATTCTGGTTCAGAAGCTTTTCTTTGAGCTTTTCCCTTTCTTGAAGGTAGCATTTGTTCTCACAAATCAGGCCATCATTGAAGCAATGGAAGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTGCTGAAGCTGCTCAGTGGATTGCTCTCCTTCAAGTATTGAGTGGGCGTCCCGAAGGCCCTCCTCATTTGAGAATCACCGGGGTTCATCAGAAAAAGGAGATTCTGGATCAGGTGGCTCATAGACTAACTGAAGAAGCAGAAAAGTTGGATATACCGTTCCAATTCAACCCTGTGGTGAGCAAATTAGAAAATCTTGATTTCGACAAACTTCGCGTGAAGACTGGCGAGGCACTAGCAATAAGTTCCATTCTCCAATTGCATACCCTTTTGGCCTGGGATGATGAAACCATGCAGAGAAAGTCTCCTCTTCTGTTGAAAACCTCAAATGGAATTCACTTGCAAAGAGTCCTGCCAATGGGCCAAAGCACATTGGGTGATTTGGTTGAGAAAGATATGGTTAATGGGTACACTCTAAGTCCTGACTCAACCTCATCTTCACCGGCATCTTTAACTACTTCCAATTCAATGAATATGGAGAGCTTTCTTAATGCCTTGTGGGGATTATCACCAAAGGTCATGGTTGTGACAGAACAAGACTGTAATCACAATGGTCCAACTCTGATGGATAGGCTACTTGAAGCTCTATATTCTTTTGCAGCATTGTTTGATTGTTTGGAATCCACTGTCTCAAGAACATCATTGGAGAGATTAAGGGTGGAGAAGATGCTTTTTGGGGAGGAAATCAAGAACATCATTGCATGTGAGGGATCTGAACGAAAGGAGAGACATGAAAAGCTGGAAAAGTGGTTCCAGAGATTTGATCTAGCTGGGTTTGGTAACGTGCCTTTGAGCTACTTTGGTATGTTGCAAGCAAGGAGGTTCCTGCAAAGCTATGGTTGTGAAGGATACAGAATGAGGGATGAAAATGGTTGTGTCTTAATTTGCTGGGAGGATCGGCCAATGTATTCAATATCAGCTTGGAGATCTAGGAAGTAA 1431 0.4326 MGFMLQEGSSSVNSSPLQFFSMMSLSPSLGSPNNLLFREMKSEERGLYLIHLLLTCANHVAAGNLENANTTLEQISLLASPDGDTMQRIATYFMESLADRILKTWPGIHRALNSTRITLLSDEILVQKLFFELFPFLKVAFVLTNQAIIEAMEGEKVIHIIDLNAAEAAQWIALLQVLSGRPEGPPHLRITGVHQKKEILDQVAHRLTEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHTLLAWDDETMQRKSPLLLKTSNGIHLQRVLPMGQSTLGDLVEKDMVNGYTLSPDSTSSSPASLTTSNSMNMESFLNALWGLSPKVMVVTEQDCNHNGPTLMDRLLEALYSFAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIIACEGSERKERHEKLEKWFQRFDLAGFGNVPLSYFGMLQARRFLQSYGCEGYRMRDENGCVLICWEDRPMYSISAWRSRK* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0816 476 PANTHER BNAA06G02820D PROTEIN 380 475 IPR030008 GO:0003700|GO:0005634|GO:0009739
Gso11g0816 476 PANTHER BNAA06G02820D PROTEIN 323 375 IPR030008 GO:0003700|GO:0005634|GO:0009739
Gso11g0816 476 PANTHER BNAA06G02820D PROTEIN 3 266 IPR030008 GO:0003700|GO:0005634|GO:0009739
Gso11g0816 476 ProSiteProfiles GRAS family profile. 40 473 IPR005202 -
Gso11g0816 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 323 375 IPR005202 -
Gso11g0816 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 266 IPR005202 -
Gso11g0816 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 380 475 IPR005202 -
Gso11g0816 476 Pfam GRAS domain family 49 473 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0816 Gso-Chr11 7329884 7332365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0816 1 476 GRAS Transcription Factor Family AT1G50420 65.155 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso11g0816 GRAS 3e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0816 - - gmx:100814131 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0816 11 7329884 7332365 Gso11g0816 11 7329884 7332365 ECH
Gso12g0192 12 1607051 1609622 Gso11g0816 11 7329884 7332365 GST