Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0777 ATGGGAGGAGACGAAGAGGAGGAGGAGGTGCTCGGTTCGGGCCAATCCGCCTCCACCAACAACAGCTTGCCACCTCCCGTCGATAAAACTATTCTCAAATTGAACCATCTCGACGTACATGCTGATGATGCTGGATCACACGCTTCTCTTGCTGGCAAGAAGAAAAAGAGAGGCGGTCAACGGGCTGTTGGACCTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAGGGGAAGAACCACATACAATGAGGTGGCGGATGAGCTTGTTGCTGAATTTTCTGAACCAAGCAATAGTGAATTGCCCCCTGATCAGCAACAATATGATGAAAAAAACATCCGCCGAAGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGATATTATTTCCAAGGACAAAAAGGAAATTCAATGGAGGGGCCTTCCTCGTACTACTGTGAATGATATTGAAGAACTAAAGACAGAGCGGCTTGGGCTCAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAATTCATAGGTCTTCAGAACCTTATTCAACGAAACGAGCAGTTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTTTGGTACAGACACGCCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTGGTGAGAGACCACAAGATGATAATATGACACACAATCTTACTGACGGAGGTGAAGTTTCTAGCATGTCAGGCTTGTGTCAGCCACAGACTCCTACAAATCTTAATGTGTCAAATAGACCTCCAACATCACCTCCTCTCCCTGGCATACTAAAGAGAAATTTGCTGCAGTTGATAGACCGTCATAATAGTTATTCATCAGTACAGCCAAGTCATTCTCTAGGTTAG 1005 0.4418 MGGDEEEEEVLGSGQSASTNNSLPPPVDKTILKLNHLDVHADDAGSHASLAGKKKKRGGQRAVGPDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSEPSNSELPPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTTVNDIEELKTERLGLRNRIEKKTAYLQELEEQFIGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPQDDNMTHNLTDGGEVSSMSGLCQPQTPTNLNVSNRPPTSPPLPGILKRNLLQLIDRHNSYSSVQPSHSLG* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0777 334 MobiDBLite consensus disorder prediction 264 309 - -
Gso11g0777 334 Gene3D - 63 155 IPR036388 -
Gso11g0777 334 PANTHER TRANSCRIPTION FACTOR DP 24 312 IPR015648 GO:0005667|GO:0051726
Gso11g0777 334 MobiDBLite consensus disorder prediction 43 73 - -
Gso11g0777 334 SUPERFAMILY "Winged helix" DNA-binding domain 70 151 IPR036390 -
Gso11g0777 334 SMART DP_2 157 316 IPR014889 -
Gso11g0777 334 MobiDBLite consensus disorder prediction 12 26 - -
Gso11g0777 334 SUPERFAMILY E2F-DP heterodimerization region 157 271 IPR037241 -
Gso11g0777 334 Pfam E2F/DP family winged-helix DNA-binding domain 70 150 IPR003316 GO:0005667|GO:0006355
Gso11g0777 334 Pfam Transcription factor DP 158 271 IPR014889 -
Gso11g0777 334 PANTHER TRANSCRIPTION FACTOR DP 24 312 - -
Gso11g0777 334 SMART E2F_TDP_2 67 150 IPR003316 GO:0005667|GO:0006355
Gso11g0777 334 Coils Coil 166 200 - -
Gso11g0777 334 PIRSF Txn_factor_DP 5 316 IPR015648 GO:0005667|GO:0051726
Gso11g0777 334 CDD DP_DD 155 258 IPR014889 -
Gso11g0777 334 Gene3D Transcription factor DP 156 280 IPR038168 -
Gso11g0777 334 MobiDBLite consensus disorder prediction 270 297 - -
Gso11g0777 334 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0777 Gso-Chr11 6989143 6992662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0777 56 268 E2F-DP Transcription Factor Family AT5G02470 52.804 5.36e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso11g0777 DP 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0777 K04683 - gmx:100800599 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0153 12 1255359 1258767 Gso11g0777 11 6989143 6992662 GST