Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0747 ATGAGTGATGCAAAAGAAAACGAGGAAGCTGGCCAGGGGGTGCCCTCGGTCGTGGAAGAAAACCAGCAGTTGGTTGATGCAGAGGTTCAAGATCAACCTGAAGCTGCCTCTGCTCCTGTTCCAGTAGAGGAAACTTCAAATCATGTTGAAATTGGGTCAGATCATGTTGAAAATACGAAGGAAGAGCCACCTGCTGAGGATAAAAATGTAGAATTAGAGGTTGTTTCAGAGGGAATTCCACAAGATGTTCAAAATACTCTTCTCTCTGTCCCAGTAGAGGCTGATGCTCAAATTTTGGATAGGACTGAGTCTGAAGAAGCTGAAGCTTCTGGTGCGAAGGTGGAGGCTGATGAATTACCACAGAATAATAAGGAGGCTGAGAATAATGATGATATTCATCAAAAAAGTAATGGCGATGTTGAGATGGCTGTGGAGGTTAAGCCTGAAGACTGTGGAATGGCTGATAGTAAAGCATGTGATAATGGTGACCCTGTGCTTGCAAGTCATAATGAGCCTGCTACGCCACAGCCTGCTCCTGCAGATACAAACACTGAAATTATGAATGTATTAGAAGTTGAGAATAAGGTTGATGAAAAGCAAGTGGCTGAACCTGCAGATAACGGGAATTCAAACTCAAAGCACATGCTTTTCTTGGATGCCGACCATTCCTATGATGGTAATGAGTCAGGAACAGAGGAAGAACAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAATTCTACGGAGAAGGACTAAATTGCCTTAAGCTGTGGAGAGCTGTAACGAGATTGGGCGGCTATGACAAGGTGACTTCATGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATACAAGGTGGTGAGCTGAATGTGCCTGTTGCTTCTCATCCAGAGCCTATAAATATTGAAAATCAGGCCTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATATACACAAACGAAAGAAGCCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACAATTGGACACAACTGTGATTGATATTGGGCCTCCTGCTGATTGGGTAAAAGTGAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTACTGCGGGAAGAGGTCCGTGTACAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGGGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCTGCGGTGGTGACACTGCATGGGCAGTTGTTTGTTCGTGTCCCATTTGAACATGCAGAATAG 1587 0.4468 MSDAKENEEAGQGVPSVVEENQQLVDAEVQDQPEAASAPVPVEETSNHVEIGSDHVENTKEEPPAEDKNVELEVVSEGIPQDVQNTLLSVPVEADAQILDRTESEEAEASGAKVEADELPQNNKEAENNDDIHQKSNGDVEMAVEVKPEDCGMADSKACDNGDPVLASHNEPATPQPAPADTNTEIMNVLEVENKVDEKQVAEPADNGNSNSKHMLFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIQGGELNVPVASHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINIHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEHAE* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0747 528 Pfam ARID/BRIGHT DNA binding domain 235 319 IPR001606 GO:0003677
Gso11g0747 528 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 428 528 IPR002068 -
Gso11g0747 528 CDD ARID 234 319 - -
Gso11g0747 528 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 28 527 IPR045147 GO:0006357
Gso11g0747 528 SUPERFAMILY ARID-like 227 334 IPR036431 GO:0003677
Gso11g0747 528 SMART bright_3 233 324 IPR001606 GO:0003677
Gso11g0747 528 CDD ACD_sHsps-like 443 523 - -
Gso11g0747 528 SUPERFAMILY HSP20-like chaperones 437 524 IPR008978 -
Gso11g0747 528 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 28 527 - -
Gso11g0747 528 MobiDBLite consensus disorder prediction 152 181 - -
Gso11g0747 528 MobiDBLite consensus disorder prediction 100 139 - -
Gso11g0747 528 SMART ARID_2 229 319 - -
Gso11g0747 528 Pfam Hsp20/alpha crystallin family 445 525 IPR002068 -
Gso11g0747 528 ProSiteProfiles ARID domain profile. 232 323 IPR001606 GO:0003677
Gso11g0747 528 Gene3D - 431 528 IPR008978 -
Gso11g0747 528 MobiDBLite consensus disorder prediction 48 71 - -
Gso11g0747 528 Gene3D - 232 330 IPR036431 GO:0003677
Gso11g0747 528 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0747 Gso-Chr11 6713451 6719818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0747 213 526 ARID Transcription Factor Family AT1G76510 63.009 3.54e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso11g0747 HSP20 2.2e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0747 - - gmx:100791081 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0747 11 6713451 6719818 Gso11g0747 11 6713451 6719818 ECH
Gso1g1333 1 49904927 49911208 Gso11g0747 11 6713451 6719818 GST