Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0736 ATGATTTTAGCTTGGCTCTTGGTTTTAATGGCTCTCTCCAATGGGTTCTTTTCAAATGGGGACGGCATGCATAATTCCACAATACCAGATTTTGTAAATATTGGGGCTCTCTTCTCTTTCAATACTAGTGTTGGCAGGAGTATAAAAATTGCTATAAAAGCTGCGATTGAAGATATAAACTCTGATCCTACTATTCTTGGTAAAACCAAGCTGAACCTCTCACTGCAAGAAGATTCTAAGTATAGAGGTTTCCTGAGCATTTCTGAGGTTTTGCAGGTCATGGCAAGACGCACGGTGGCAATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTCACATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCAGCTTTGGACCCTACCCTTTCTTCACTTCAATTCCCATTCTTCATTAGAACCTGTCACAGTGATCTTTATCAAATGACTGCAATAGCAGACATTGTAAACTACCATGATTGGAAAGATGTTATTGCTGTCTACCTTGATGATGATAATGGGAGAAATGGAATTGGTGCATTAGGCGATAAGCTTGCTGAGAGGCGTTGCAGGATATCATATAAAGCACCTTTGAGCCCGGACGCATCTATGGAAGAGATTTCTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGCAAATACTCAATTTGGCCCCAAGTTGTTTAGTGTTGCAAAGAATCTTGGGATGATGGGAACTGGGTATGTCTGGATAGCCACTGCTTTCCTCTCTGCTCTGCTTGATATCAACAGTCCCCTCTCTTCAGATTCATTGGATGACATTCAAGGAGTTCTTACACCGCGTATGTACACGCCGGATTCACAGCTCCAAAGGAGGTTTGCTTCTAGGTGGAAAAACTTGACTAGTGGGAATACTGCTAATGCCCACCTTGGATTGAGCTTTTTACCTATATACGCATATGACACTGTTTATGTGCTTGCTCATGCACTTGATGCATTTTTCAAACAAGGTAACCAAATTACATTCTCAACTGATTCAAAGCTATCTAGCATACATGGAGATAACTTGAATCTTGAAGCCTTGAAAATCTTCAATGAAGGAAATTTGTTACGCAGTAACATCTATGAGGTTAACATGACTGGTGTATCAGGTCCATTCAAGTACACATCTGATAGAAACCTTGTTAATCCTGCATATGAAATCATTAATGTCATTGGAACTGGAACTCGGAGGATCGGTTATTGGTCTAATTACTCTGGACTATCAGTTGTTCCTCCGGAAACTCTTTATTCCAAACCAGCCAATCTTTCCAGGGAAAATCAAAAGTTGTTCGCTCCAATTTGGCCTGGAAACACTGGTGAGAGACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAGATTGGCGTACCAAAAGGTGTTAGTTACAAAGAATTTGTCTCACAAATAGAAGGTACTGATACGTTTGAAGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAGCCTGTTGTCTTATGCTGTCCCCTATAAGTTTGTCCCATACGGGGAAGGTAAGAACAATCCTAGTATGACTGAGCTTGTCCGTCTGATCACAACTGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCGGTTAGGAAGGAAGAATCCAATGCTTTGGCCTTTTTGGCCCCTTTTACCCCAAAGATGTGGTGTGTCACAGCTATCTTTTTCATATTAGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAAAAAACAAGTAGTTACTGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGCGCACTTGGTCGCTTTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCGAGTTACACGGCAAGTCTAACATCAATCCTCACAGTGCAACAGCTTTATTCGCCCATTAAAGGCATTGAAAGTTTAGTAATTGGCAAAGAGCCTATTGGGTACACACAGGGTTCTTTTGCTAGAAATTATTTAGTTCATGAAATTGGTATTAATGAGTCCAGGCTTGTTCCTCTAACAACAACAGAAGAAGCTGCTAAAGCACTGAGAAAGGGTCCCGAAAATGGGGGTGTTGCTGCTTACATTGATGAGCGTGCCTACACTGACATCTTCCTTTCCAGCCGTTGTGATTTAACTGTTGTAGGTCAAGAGTTCACCAGAAACGGTTGGGGATTTGCCTTTCCACGGGACTCGCCATTAGCAGTTGACCTGTCAACTGCCATATTGCAAATGATAGATAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTAGCGCTTGCTTATCACAAGGTGCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCCTCTATGTGATCTGCGGGCTTGCCTGCTTGCTTGCACTCTTGACGAAAAAGAAGAGACCGTTAAGAGCCGGTCCAAGAGAAGAAAAATGGAGAGGATCTCATACAGAAGCAGTGAAGGAAGCTCATCCATCAGCTCTAATAAGGGATATGCTCCACGCAGAAGTGAATGTGCTAGCGAAGTATGACCAATATTTCTACATGATTTTCTAG 2718 0.4157 MILAWLLVLMALSNGFFSNGDGMHNSTIPDFVNIGALFSFNTSVGRSIKIAIKAAIEDINSDPTILGKTKLNLSLQEDSKYRGFLSISEVLQVMARRTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMTAIADIVNYHDWKDVIAVYLDDDNGRNGIGALGDKLAERRCRISYKAPLSPDASMEEISNVLVQVALAESRVIVVHANTQFGPKLFSVAKNLGMMGTGYVWIATAFLSALLDINSPLSSDSLDDIQGVLTPRMYTPDSQLQRRFASRWKNLTSGNTANAHLGLSFLPIYAYDTVYVLAHALDAFFKQGNQITFSTDSKLSSIHGDNLNLEALKIFNEGNLLRSNIYEVNMTGVSGPFKYTSDRNLVNPAYEIINVIGTGTRRIGYWSNYSGLSVVPPETLYSKPANLSRENQKLFAPIWPGNTGERPRGWVFPNNGRLLKIGVPKGVSYKEFVSQIEGTDTFEGFCIDVFLAAVSLLSYAVPYKFVPYGEGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVRKEESNALAFLAPFTPKMWCVTAIFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSALGRFVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVIGKEPIGYTQGSFARNYLVHEIGINESRLVPLTTTEEAAKALRKGPENGGVAAYIDERAYTDIFLSSRCDLTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDNGDLQRIHDKWLLSSACLSQGAKLEVERLQLKSFWGLYVICGLACLLALLTKKKRPLRAGPREEKWRGSHTEAVKEAHPSALIRDMLHAEVNVLAKYDQYFYMIF* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0736 905 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Gso11g0736 905 Pfam Bacterial extracellular solute-binding proteins, family 3 490 812 IPR001638 -
Gso11g0736 905 Gene3D - 50 400 - -
Gso11g0736 905 PANTHER GLUTAMATE RECEPTOR 3.6 11 850 - -
Gso11g0736 905 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 850 - -
Gso11g0736 905 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Gso11g0736 905 Gene3D - 479 582 - -
Gso11g0736 905 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Gso11g0736 905 CDD GluR_Plant 472 812 - -
Gso11g0736 905 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Gso11g0736 905 Gene3D - 583 711 - -
Gso11g0736 905 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Gso11g0736 905 Gene3D - 759 819 - -
Gso11g0736 905 Gene3D - 148 425 - -
Gso11g0736 905 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Gso11g0736 905 PIRSF IGluLR_plant 1 882 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0736 Gso-Chr11 6575268 6580164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0736 3 887 Ion Channels AT3G51480 57.159 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0736 K05387 - gmx:100785258 1655.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1347 1 50115959 50121167 Gso11g0736 11 6575268 6580164 GST
Gso11g0736 11 6575268 6580164 Gso16g0909 16 24730674 24735680 PCT
Gso16g0909 16 24730674 24735680 Gso11g0736 11 6575268 6580164 PCT