Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0725 ATGGATTCCTCGCACACCAACACCACTTTGCTCACCAACCTACTAGTCTTCAACAACACCCTCCAACCAGAGTTGATGAGGAGCGTGCATGTGTACCGCCGAGGGGGTGGAGAGAAAAGGGAAGTTGAGAGAGAGTTTGTGTTTTCAGAGAGTGGCTCCTATGTGGAAATGCAGGCTACCCCAATTCCTGGATTGGTGAAATCTCGTGTTTCTGAAGTGTGTGAAGGGCACCGGAATGGAGTGTGGCTTTGTGTCTTTGCGTTTCATGCCGATCACACTCCTCAATTTTGCCGCATTCCACGGCTTTTGTTGGTTACAAGAAACCCAAAGCTTAAGATGATTCCAAACTTGCTTGATGATCTCCACATGATATACAAGTTGAACCGGAAGGAGGAAGACAGAGATATAGCCCAAGACTCTACAGGAGAAGAAAGGCAAGGACACAGCAACAATTTCCAACCATCACGAAAAGTCTTTCCCGTTCTTGATCAGGATCTCAATTTTCTTCCTTATGAAGACTATGAGTCTGAGTCACCGGACAATGAGACAGATGTTGAAAGCTCACCAGGTTTTCTAGTGAAGAAAAAGAGGGCACCCAGTGATCTTGTAGCAAAAATTTCTTTATCAGATTTGGTGAAGTACTTTGGTATGCCAATTGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTAAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTTCAGGAAGAGGCAAAGAACCAAGAATTGGAGGACAGGGAAGCAGCTATGGCCGTGGCAAAGAGGCAAAGGATGTTGGAGAGTGAAAAGGAAAACATAGAGAAGAAACCCTTCATGGACATAAAAATTGAGACCAAGAGATTCAGGCAAGATGTTTTCAAGAGAAGACACAGAGCTAGAGCTGTTGAAAAACACAATTCTACAGTATCCAGCACATAG 996 0.4398 MDSSHTNTTLLTNLLVFNNTLQPELMRSVHVYRRGGGEKREVEREFVFSESGSYVEMQATPIPGLVKSRVSEVCEGHRNGVWLCVFAFHADHTPQFCRIPRLLLVTRNPKLKMIPNLLDDLHMIYKLNRKEEDRDIAQDSTGEERQGHSNNFQPSRKVFPVLDQDLNFLPYEDYESESPDNETDVESSPGFLVKKKRAPSDLVAKISLSDLVKYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKNQELEDREAAMAVAKRQRMLESEKENIEKKPFMDIKIETKRFRQDVFKRRHRARAVEKHNSTVSST* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0725 331 Coils Coil 250 270 - -
Gso11g0725 331 ProSiteProfiles RWP-RK domain profile. 188 273 IPR003035 -
Gso11g0725 331 PANTHER PROTEIN RKD5 16 324 - -
Gso11g0725 331 Pfam RWP-RK domain 206 253 IPR003035 -
Gso11g0725 331 MobiDBLite consensus disorder prediction 134 155 - -
Gso11g0725 331 PANTHER PROTEIN RKD4 16 324 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0725 Gso-Chr11 6472039 6477001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0725 21 331 AtRKD Transcription Factor Family AT4G35590 48.012 2.47e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso11g0725 RWP-RK 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0725 - - gmx:100306328 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0725 11 6472039 6477001 Gso11g0725 11 6472039 6477001 ECH
Gso1g1361 1 50235605 50240902 Gso11g0725 11 6472039 6477001 GST