Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0724 ATGGGTGTCTGCTTTGCTTCGCTCGCTCGCCACCAAACACCCTCTAAATCCATTCCCTACGCAGGTTCAGGGCGTGAGTCCTTGGGGAGCAAGGATGAGAATATGGGGATTACTGAAAGCACTAGTAGTGTTAATGGAGGAAGCTGTAGTAGTCATAGCAGCAAGAACATTGTGTTTCCTAGCGTGGAAGTGCGGAACCTGAAGGAGTTCAGTTTTGCGAATCTGAAAGCAGCCACCAAGAGTTTCAAATCGGATGCATTGCTTGGAGAAGGAGGTTTCGGAAAAGTATACAAAGGATGGTTGGATGAGAAGACACTGGCACCGACCAAAGCTGGTTCTGGAATCATGGTTGCTATTAAGAAATTGAATCCCGAAAGTATGCAGGGCCTTCGAGAGTGGCAGTCAGAAATCGACTTTCTAGGAATGATTTCGCACCCAAACCTGGTCAAGCTTTTGGGTTACTGTTGTGACGATGTCGAATTTCTTCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGAATCATCTATTTTGGAGAAATACAAACACAGAACCGCTCTCTTGGGACACTCGAATCAAAATAGCTATTGGTGCTGCTCGGGGCTTGGCTTACTTGCACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCCAACATACTACTTGATGAGGATTACAACGCAAAAATTTCAGATTTTGGCTTGGCGAAATTAGGGCCTTCGGGTGGAGATTCACACGTGAGTACGAGGATCATGGGAACATATGGCTATGCTGCTCCAGAATACGTTGCAACAGGACACCTTTACGTGAAGAGTGATGTTTATGGTTTTGGTGTGGTGCTGCTTGAAATGCTGACAGGGATGAGGGCAATTGATAGAAACCGCCCCATAGAGCAGCAGAATCTAGTTGAATGGGCCAAGCCTTCTCTCTCTGATAAAAGCAAGTTTAAAAGCATTATGGATGAAAGGATAGAGGGTCAGTATTCAACCAAGGCAGCATTGAAAGCAACACAGCTTACTCTAAAATGCCTTGAACGTGACCTTAAAAAACGTCCTCATATGAAAGATGTTCTCGAGACATTGGAATGCATAAAAGCTATCAAGGTTACGAGGAAGGAAGGCAAAAAACGTTGTTCTAAGTTTGCAACTACCAACAATGTACAATAG 1176 0.443 MGVCFASLARHQTPSKSIPYAGSGRESLGSKDENMGITESTSSVNGGSCSSHSSKNIVFPSVEVRNLKEFSFANLKAATKSFKSDALLGEGGFGKVYKGWLDEKTLAPTKAGSGIMVAIKKLNPESMQGLREWQSEIDFLGMISHPNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFWRNTNTEPLSWDTRIKIAIGAARGLAYLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGGDSHVSTRIMGTYGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTGMRAIDRNRPIEQQNLVEWAKPSLSDKSKFKSIMDERIEGQYSTKAALKATQLTLKCLERDLKKRPHMKDVLETLECIKAIKVTRKEGKKRCSKFATTNNVQ* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0724 391 SUPERFAMILY Protein kinase-like (PK-like) 51 364 IPR011009 -
Gso11g0724 391 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 17 379 - -
Gso11g0724 391 CDD STKc_IRAK 88 365 - -
Gso11g0724 391 Gene3D Transferase(Phosphotransferase) domain 1 168 389 - -
Gso11g0724 391 MobiDBLite consensus disorder prediction 33 52 - -
Gso11g0724 391 PANTHER OS01G0588500 PROTEIN-RELATED 17 379 - -
Gso11g0724 391 Pfam Protein tyrosine and serine/threonine kinase 85 364 IPR001245 GO:0004672|GO:0006468
Gso11g0724 391 Gene3D Phosphorylase Kinase; domain 1 53 167 - -
Gso11g0724 391 ProSiteProfiles Protein kinase domain profile. 82 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0724 391 ProSitePatterns Protein kinases ATP-binding region signature. 88 121 IPR017441 GO:0005524
Gso11g0724 391 MobiDBLite consensus disorder prediction 16 52 - -
Gso11g0724 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0724 Gso-Chr11 6463413 6468284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0724 4 364 Glycoside Hydrolase AT3G07070 45.822 1.24e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso11g0724 PK_Tyr_Ser-Thr 9.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0724 - - gmx:100778116 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0724 11 6463413 6468284 Gso11g0724 11 6463413 6468284 ECH
Gso11g0724 11 6463413 6468284 Gso16g0951 16 26311784 26315209 PCT
Gso16g0951 16 26311784 26315209 Gso11g0724 11 6463413 6468284 PCT