Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0718 ATGGGAGGTGATGACGCTGCCGCTGAGAGTGCCACCACAGAGCGGAACGCCGCAAACGAAGTCAACATCAACATCCGCTGTTCCAATGGTTCCAAGTTTTCCGTTCAGATTGGCCTCGATTCCACCGTCAGATCCTTCAAGGAGGCGGTTGCTCACAATTGTGATATATCCTCTGATCAACAGCGCCTGATTTACAAGGGTCGGATCCTCAAGGATGATCAACCCCTCCAAAGCTACGGTTTGGAGGCTGATCACACTGTCCATTTGGTTCGTGGTTTTTCTCCTTCTAACACCACTGGTGGGACTAATAGTGGTGGTGGCGGTGGTGGAAATACCACAACTGCCAACACGAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGATTTGGAGCTTCACCGTTTCCTGGACTTGGTGGTAACAACGGGATGGGGGGCGGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCGGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAATGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCAGACATAGTGCGGAATCTTATAATGAATAACCCGCAGATGCAAGAGCTAATGGATAGGAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACACTCGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAACACTGGAAATGATGCTGCAGCAGTCAGGAACCAATCCACTAATCCCTCAACTACTAATTCTGAAGCAACTTCCCCTGTACCCAATACGAACCCACTTCCTAATCCGTGGTCCTCAACTGGAACTGGAGGAGGAGGCCAAACTAACACCAGAAGGTCAACTACTACTGGTGGGGACGCCCGACAGCCGGCACCCACTGGCCTAGGAGGGCTTGGACTGCCAGATCTTGAAGGCATGATGGGTGGGATGCCAGATACTGCTATGTTGACCCAGTTAATGCAAAACCCAGCCATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACCATGAATCAGATTCTTGGGGTCAATAATGAGCAGCGTGGCATGCCTGATTTAAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTCTACGCCTGTTTTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAACACTTCTGTCTCAGCTTGGTCAGCAACAATCAGCACAGGAACCAGGTCAAACAGGTGGAGGCACTGGACCATTGAACAACATGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTGGCTGTTCCTAACAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAACGTACATGCAGCAGTTGAGCGGCTTTTGGGGAACCCCGGACAGTAG 1626 0.4871 MGGDDAAAESATTERNAANEVNINIRCSNGSKFSVQIGLDSTVRSFKEAVAHNCDISSDQQRLIYKGRILKDDQPLQSYGLEADHTVHLVRGFSPSNTTGGTNSGGGGGGNTTTANTRGAGANEGGGLGGPGFGASPFPGLGGNNGMGGGGLNGLFGAGFPDLEQMQQPFLSNPNLMRDIMNTPAMQNLINNPDIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDAAAVRNQSTNPSTTNSEATSPVPNTNPLPNPWSSTGTGGGGQTNTRRSTTTGGDARQPAPTGLGGLGLPDLEGMMGGMPDTAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNNEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQTLLSQLGQQQSAQEPGQTGGGTGPLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNPGQ* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0718 541 Gene3D - 7 105 - -
Gso11g0718 541 SMART ubq_7 21 92 IPR000626 GO:0005515
Gso11g0718 541 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 541 - -
Gso11g0718 541 MobiDBLite consensus disorder prediction 91 134 - -
Gso11g0718 541 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Gso11g0718 541 MobiDBLite consensus disorder prediction 278 343 - -
Gso11g0718 541 Gene3D - 481 541 - -
Gso11g0718 541 SUPERFAMILY UBA-like 495 537 IPR009060 GO:0005515
Gso11g0718 541 SUPERFAMILY Ubiquitin-like 16 108 IPR029071 -
Gso11g0718 541 SMART uba_6 499 537 IPR015940 -
Gso11g0718 541 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 493 538 IPR015940 -
Gso11g0718 541 PANTHER UBIQUILIN 3 541 - -
Gso11g0718 541 SMART CBM 355 397 IPR006636 -
Gso11g0718 541 SMART CBM 203 242 IPR006636 -
Gso11g0718 541 SMART CBM 400 435 IPR006636 -
Gso11g0718 541 SMART CBM 149 190 IPR006636 -
Gso11g0718 541 MobiDBLite consensus disorder prediction 91 120 - -
Gso11g0718 541 MobiDBLite consensus disorder prediction 446 468 - -
Gso11g0718 541 Pfam UBA/TS-N domain 499 535 IPR015940 -
Gso11g0718 541 Gene3D - 198 256 - -
Gso11g0718 541 MobiDBLite consensus disorder prediction 446 464 - -
Gso11g0718 541 MobiDBLite consensus disorder prediction 278 357 - -
Gso11g0718 541 CDD UBA_PLICs 499 537 - -
Gso11g0718 541 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Gso11g0718 541 CDD Ubl_Dsk2p_like 21 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0718 Gso-Chr11 6408056 6414998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0718 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 8.94e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0718 K04523 - gmx:100780421 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0718 11 6408056 6414998 Gso11g0718 11 6408056 6414998 ECH
Gso1g1364 1 50308795 50315277 Gso11g0718 11 6408056 6414998 GST
Gso11g0718 11 6408056 6414998 Gso2g0352 2 3857489 3864051 PCT
Gso11g0718 11 6408056 6414998 Gso16g0953 16 26389173 26403352 PCT
Gso2g0352 2 3857489 3864051 Gso11g0718 11 6408056 6414998 PCT
Gso16g0953 16 26389173 26403352 Gso11g0718 11 6408056 6414998 PCT