Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0713 ATGGCAAAAACACCATCTGAAGAAGAGAGAGAAATGGATAATGGAAACGATGAGGAGGGTGGTGAAGGAGAAGTGGGAGCTAAAATGGTACAGAATATAAAAATAAAGTTAGTGTGTGGTAAGGATTCAGGTTCAAGAACAGCCTCGTCGTCTAGCCACAGTTTTTGTCAGGCCGATGAATGTGGTGTGAACTTGAGCATGGCCAAGAGTTACAACCGCCGTCACAAGGTTTGTGAGAGACATGCTAAGGCTCCTGTTGTTTTAGTTTCTAGCATTCGTCAGAGGTTCTGCCAGCAATGTAGTAAGTTCCATGAACTTGCAGAGTTTGATGACACCAAAAGAAGTTGCAGGAAAACATTGGCAGGGCATAATGAGCGTAGAAGAAAAGCTCGCATAGACGTATCCTTAGGAGGTGGTGAACAGCATCAGTCACATTTCTAA 441 0.4376 MAKTPSEEEREMDNGNDEEGGEGEVGAKMVQNIKIKLVCGKDSGSRTASSSSHSFCQADECGVNLSMAKSYNRRHKVCERHAKAPVVLVSSIRQRFCQQCSKFHELAEFDDTKRSCRKTLAGHNERRRKARIDVSLGGGEQHQSHF* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0713 146 ProSiteProfiles Zinc finger SBP-type profile. 53 130 IPR004333 GO:0003677
Gso11g0713 146 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 141 IPR044817 GO:0003677
Gso11g0713 146 PANTHER - 2 141 - -
Gso11g0713 146 Pfam SBP domain 56 129 IPR004333 GO:0003677
Gso11g0713 146 SUPERFAMILY SBT domain 55 134 IPR036893 GO:0003677|GO:0005634
Gso11g0713 146 MobiDBLite consensus disorder prediction 1 27 - -
Gso11g0713 146 Gene3D - 46 117 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0713 Gso-Chr11 6345547 6346588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0713 55 139 SBP-box Gene Family AT3G15270 65.882 1.10e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso11g0713 SBP 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0713 - - gmx:100820357 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0713 11 6345547 6346588 Gso11g0713 11 6345547 6346588 ECH