Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0683 ATGGATTTTGCGCTGAATCCGTGTCCTTTGCGATCTTCTACGTTCGTGAATTTCGTCGAGAGGGTTAAACAGCTTGGTACCCTCGCCTTTTCTGCAGTCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGTTGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTCTGGCAATCTGATGAATCTGGGATTGGCTGTGTCTTATACTTGATTGATGTTATTGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGTCCGGCCATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAGCCAGCTTTGATGAGGTTCAAAACATCTTCGACACCGGGGGTTCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCCAAAATAAAAATTACAACAGACAACAATTTTGATGCATCCGGTGATAGAGTCTCTTGTTCAGTTTGCCTGCAGGACTTTATGCTTGGAGAGACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 699 0.4535 MDFALNPCPLRSSTFVNFVERVKQLGTLAFSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEASFDEVQNIFDTGGSKGLSGDLVEKIPKIKITTDNNFDASGDRVSCSVCLQDFMLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0683 232 Pfam Ring finger domain 186 229 IPR001841 -
Gso11g0683 232 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 10 232 - -
Gso11g0683 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Gso11g0683 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Gso11g0683 232 CDD RING-H2_PA-TM-RING 187 229 - -
Gso11g0683 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 232 IPR044523 -
Gso11g0683 232 SUPERFAMILY RING/U-box 186 232 - -
Gso11g0683 232 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Gso11g0683 232 SMART ring_2 187 228 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0683 Gso-Chr11 6085207 6088189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0683 16 232 C3H Transcription Factor Family AT5G66070 76.498 4.87e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0683 - - gmx:100306109 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0683 11 6085207 6088189 Gso2g0376 2 4037092 4039654 PCT
Gso11g0683 11 6085207 6088189 Gso16g0976 16 27082545 27085696 PCT
Gso2g0376 2 4037092 4039654 Gso11g0683 11 6085207 6088189 PCT
Gso16g0976 16 27082545 27085696 Gso11g0683 11 6085207 6088189 PCT