Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0678 ATGACTCTCAAAGGCTTGGTATCACTTGTCATCAATTTAATTGGCCTAGCTGAGGGAACAAGGAACAATGATGCCCCCCCTTTACCTTGTTACATGCTATCTAGCCATATACAAAATAACAAGCAACAATCATCTGAATCAGCATCAGCATCCAATTTTAATGAGGATAGTTGGTGTTGTGTGTGCTTGTCAAGGTTAAAGGCCAAAGATGAAATCCGTGTCCTTCCTTGCTCGCACAAATTCCATAAGATTTGTGTAAATAAATGGCTTAAGGGTCGCCACAAGACGTGTCCACTTTGCCGTTTCTCAATGGGAGCCGAGGAGAAGTCTCATCGTGCCGAAATGTTCACTGAAGAGATGTTAATATGGTTTTCTTCTTTCCATGTAGCTGCAGATACATCCTAA 405 0.4173 MTLKGLVSLVINLIGLAEGTRNNDAPPLPCYMLSSHIQNNKQQSSESASASNFNEDSWCCVCLSRLKAKDEIRVLPCSHKFHKICVNKWLKGRHKTCPLCRFSMGAEEKSHRAEMFTEEMLIWFSSFHVAADTS* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0678 134 SMART ring_2 59 100 IPR001841 -
Gso11g0678 134 PANTHER GB|AAF27103.1 8 117 - -
Gso11g0678 134 PANTHER TARGET OF ERK KINASE MPK-1 8 117 - -
Gso11g0678 134 CDD mRING-H2-C3H2C2D_ZSWM2 59 101 - -
Gso11g0678 134 ProSiteProfiles Zinc finger RING-type profile. 59 101 IPR001841 -
Gso11g0678 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 107 IPR013083 -
Gso11g0678 134 SUPERFAMILY RING/U-box 50 105 - -
Gso11g0678 134 Pfam Ring finger domain 59 101 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0678 Gso-Chr11 6040459 6041510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0678 28 105 C3H Transcription Factor Family AT1G80400 38.636 5.47e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0678 - - gmx:100527665 258.07