Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0661 ATGGCAGAAAACAAAGACGAAATCTATTCTGAATGTTCACCAGGCTCAAACTCTCCAATGGGTAGCAAGTGCAGATACTTGTTTCATAGATTATGCGGTTGTGACACTTCATGGAACAAAAACAGCTCCCCAAAGAGTCGAAGAATTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCTAGTAGTCACTGTCTCTCATCCTACTACAGTGTCTTTGTGGTTCGACTAGCAATCATGGTGATGCTAGCCATCTTGATAGGGTTGCTCACTATACTGACATGGCATTTCACCAAGATTTATACAGCAAAATCACTTCGCAGCTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCCGTTTTGAGGATGTGGAATATTTTAAACTCTACTTCTGAAATCACTACAGCTCAGGTCAAACTGTCTCAGTATGTGATCAGACGTCACAGCAACCCTGCGACTCAAGCAGAGCAAGTTGAGCAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCGTTATTTGCTAGTCGAAAAGCTCTAAACTCTATAACTATCAATTATAAGAATGGATTTGTTCAAGCGTTCCACAGAGATCTTAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTACTCCATGGGTGCTAGCAACTCTAATGAGGTCAATTCCATTTCAAAGCACCGAGCTTGGGATGATAAAGGCCTTCATGGTAACTATTCTTCAATCTGGTACCGAGAACCACTTGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCACCTGAAGACTTGATCAACATCGCTGGACTTTCCCAAGTGCCTGACGGTGTAGCTTCGTGGCATGTCGCAGTGAGCAAGTTCACAGATTCACCATTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACTATTATGGCGGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGCTAATGAGAGAGCTAGTTGAGATGCACAGTGGCCATATGTATTTGACATCTCAAGAGGGTTACTTACTTGCAACTTCCACAAGTGCACCTCTACTGGAAACTTCAACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAGACAACGTAATTCGACTGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCATGAGATTCATGTAGAGAATGTCAAGCTAGGTCACCAGAGATATTACATTGACTCATTCTTCCTAAATTTAAAGAGACTTCCTTTGGTAGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTACAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAATCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCAGATGACTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGTTCAACTGCTCTGCTCCGTCTTCTTAATAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATGAACCACAATGTGGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGGTAGTCCGTGGAGATTCTGCGAGAGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTGTGAAAACCAAAATTCTTACGTTGGTAGTCCTCTTGACCAGAAGAAATCTCGGAGTTTACAAAAGTGCATAGAGAGGCCAAATGCAAACCATGCAAAGAGAACTTCTGTGAAAGATAACAAAGTGATACTTTGGTTTGAAGTTGACGACACAGGCTGTGGTATTGACCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAGGCTGATCCATCAACTACACGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTGAGAAACTTGGTTAACAAGATGGGTGGAGACATCAGGGTTGTCAAAAAGGAGGGCTCAGGAACACTAATGCGATTATGCTTGCTTCTCAGTGCGCCAATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACAATGGCTTAGTGGTACTGCTTGCTCTGCATGGCAACATGGGTCGATTAATTACATCCAAGTGGCTACAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAACGGACTAACTCAAATTTTGAGGGAACTCTTTCATGCAGGAAGTTCAGTTCATAATACTGACTTTGAGGCACACTATCCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAACATAAGAGATATGAGGAACCCGGGTTTTGTCATTGTTGTTGACATTGGACTACTTGACTTGAGTACAGATATATGGAAGGAACAGTTTAACTTCCTCCACAGGTACTTTGGTAGAGCAAAGTTTGTATGGATGTTAAACCATGACACTTCCAATACCATAAAAATGGAGCTCCGTAGGAAAGGGCATATACTTATGGTTAACAAACCCCTTTACAAAGCAAAAATGATTCATATCTTGGAAGCTGTCATAAATGAGAGAAATCTTGAGCTACAAAAGAAAAACATGATAGCTCCAAGGACCACAATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCCACTCATTTTGATGGTGCTAGCTCTGATGATTCTGACATATCAGAAATAAGTGGTTCTAATCCCGTTAGTGCTAATGGAGATAAACCAGTTGAGAAGCTAGAAAACTCTCATCCATCATCACCACACCATATGAATAACTGCCTAGTTAGATTAACAAATGAAAATGAATGTTTGGAAGAACATAATTTGAGGAAAGAAGAATCTTCTAGTCCCAGCTCCAGTTCTGCCACTGAAGACAACCAACCTAAATCACTATCCACCAAAGAATCATCATCCATTTCAACAGAAGATCAGGATGAAGATTCTGAATGTGGGGACACAAATAGGGTCACCAGCTCAAGTAAAGCAGTAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTTGCTACCATAATGCTTGAAAAAATGGGAGCAGATGTTGTTGCTGTAGGTGATGGACAACAGGCAGTAGATGCTCTCAATTGCATGTTCACTGCTGAAGACTGTAGAAGAGAATCACTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTCGACTTGCCGTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCAGGAAATCAGAAGTGGGAACAAGCAGGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAAGAACATCTTGA 3738 0.4112 MAENKDEIYSECSPGSNSPMGSKCRYLFHRLCGCDTSWNKNSSPKSRRIFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLRSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVEQLYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMGASNSNEVNSISKHRAWDDKGLHGNYSSIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVEMHSGHMYLTSQEGYLLATSTSAPLLETSTKPPKLKMAVDCEDNVIRLGAEWLQRTYGNNFPPSHEIHVENVKLGHQRYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAYKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCMNHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCENQNSYVGSPLDQKKSRSLQKCIERPNANHAKRTSVKDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIRVVKKEGSGTLMRLCLLLSAPMDVTEQQCAVDLTDNGLVVLLALHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHAGSSVHNTDFEAHYPAKEELKSKLLNIRDMRNPGFVIVVDIGLLDLSTDIWKEQFNFLHRYFGRAKFVWMLNHDTSNTIKMELRRKGHILMVNKPLYKAKMIHILEAVINERNLELQKKNMIAPRTTMKEGDLHEFLEIDSTHFDGASSDDSDISEISGSNPVSANGDKPVEKLENSHPSSPHHMNNCLVRLTNENECLEEHNLRKEESSSPSSSSATEDNQPKSLSTKESSSISTEDQDEDSECGDTNRVTSSSKAVVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVDALNCMFTAEDCRRESLQKERNTRSQTEISTCRPYDLILMDCQMPKMDGYEATKAIRKSEVGTSRHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKRTS* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0661 1245 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 491 570 IPR036097 GO:0000155|GO:0007165
Gso11g0661 1245 Pfam Response regulator receiver domain 1097 1236 IPR001789 GO:0000160
Gso11g0661 1245 SUPERFAMILY CheY-like 1093 1242 IPR011006 -
Gso11g0661 1245 ProSiteProfiles Response regulatory domain profile. 1096 1241 IPR001789 GO:0000160
Gso11g0661 1245 ProSiteProfiles Histidine kinase domain profile. 510 765 IPR005467 -
Gso11g0661 1245 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 616 763 IPR003594 -
Gso11g0661 1245 SMART HKATPase_4 616 765 IPR003594 -
Gso11g0661 1245 MobiDBLite consensus disorder prediction 1036 1060 - -
Gso11g0661 1245 Pfam His Kinase A (phospho-acceptor) domain 504 569 IPR003661 GO:0000155|GO:0007165
Gso11g0661 1245 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 558 761 IPR036890 -
Gso11g0661 1245 Gene3D - 571 766 IPR036890 -
Gso11g0661 1245 Coils Coil 1016 1036 - -
Gso11g0661 1245 CDD REC_hyHK_CKI1_RcsC-like 1097 1237 - -
Gso11g0661 1245 Gene3D - 491 570 - -
Gso11g0661 1245 Gene3D - 1075 1243 - -
Gso11g0661 1245 MobiDBLite consensus disorder prediction 978 992 - -
Gso11g0661 1245 CDD HisKA 504 565 IPR003661 GO:0000155|GO:0007165
Gso11g0661 1245 SMART REC_2 1095 1237 IPR001789 GO:0000160
Gso11g0661 1245 SMART HisKA_10 503 569 IPR003661 GO:0000155|GO:0007165
Gso11g0661 1245 MobiDBLite consensus disorder prediction 1029 1086 - -
Gso11g0661 1245 PANTHER TWO-COMPONENT HISTIDINE KINASE 20 1242 - -
Gso11g0661 1245 MobiDBLite consensus disorder prediction 972 1013 - -
Gso11g0661 1245 PRINTS Bacterial sensor protein C-terminal signature 690 704 IPR004358 GO:0016310|GO:0016772
Gso11g0661 1245 PRINTS Bacterial sensor protein C-terminal signature 708 718 IPR004358 GO:0016310|GO:0016772
Gso11g0661 1245 PRINTS Bacterial sensor protein C-terminal signature 725 743 IPR004358 GO:0016310|GO:0016772
Gso11g0661 1245 PANTHER OSMOSENSOR HISTIDINE KINASE 20 1242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0661 Gso-Chr11 5940522 5948315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0661 17 1242 Histidine Kinase Gene Family AT2G17820 64.715 0.0 1585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso11g0661 HATPase_c 4.6e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0661 - - gmx:100807543 2441.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0661 11 5940522 5948315 Gso11g0661 11 5940522 5948315 ECH
Gso11g0661 11 5940522 5948315 Gso2g0395 2 4199202 4206326 PCT
Gso2g0395 2 4199202 4206326 Gso11g0661 11 5940522 5948315 PCT