Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0651 ATGGGCATCTGTTTCTCTGCCACCAAGGTCAGCGGCTCTAGCAGCAACAACGCCGCCGCATCCAACCGTAACCGCAAAGGTCTGGCCGCGCCGGCCCCGGCGCCGCCAGCGCAGCCGGAGCTGGAGCCGGTGACGGGGAAGCAGAAGAAGCAACCGTCGCAGGCTAAACGGCGGCAAGTGCCGGAGGATTCGCAGAAGAACCCACGCTCCAAAGACAAAGCGGGTGCGCGTCGGCAAGGGACGCATGTTCCGTGCGGAAAGCGAACGGATTTCGGGTACGAGAAAGACTTCGAGAATAGATTCTCGCTCGGGAAATTGTTGGGACATGGACAATTCGGTTACACCTACGTTGGAATAGACAAAACAAATGGGGATCGTGTCGCCGTTAAGAGACTCGAGAAGAGCAAGATGGTTCTCCCCATAGCGGTTGAGGATGTTAAGCGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCCATAATGCTTTTGATGATGAATCATACGTGTACATAGTTATGGAGCTATGTGAGGGTGGAGAATTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAAATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGGTTGGTACACCGGGACATGAAACCAGAGAATTTTCTTTTCAAGTCAACCAAAGAAGATTCACCTTTAAAGGCTACCGATTTTGGTTTGTCTGATTTTATAAAACCTGGAAAGAGGTTTCAAGATATTGTTGGCAGTGCTTACTATGTTGCACCAGAAGTGTTAAAACGAAAGTCAGGTCCCGAGTCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACGGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCGGATTTCCGGCGGAAACCATGGCCTACCATAAGCAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCTCGTGCAAGATATACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAATATAGTCGGTTGAAACAATTTGCACTAAGGGCATTGGCTAGCACACTTAATGAAGGAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATTGATGTGGACAAAAATGGTTCTATTAGTCTTGAGGAGATGAGACAGGCTCTCGCTAAAGATCAACCTTGGAAGTTGAAAGAATCACGTGTGCTGGAGATATTGCAAGCGATAGACAGCAACACAGATGGGCTAGTGGATTTCACCGAGTTTGTGGCAGCTACATTACATGTACATCAATTGGAGGAACATGATTCTGACAAGTGGCAGCAGCGGTCACAGGCTGCTTTTGAGAAATTTGACTTGGATAAGGATGGCTTTATTACTCCAGATGAACTTAGAATGCATACGGGTTTGAGAGGCTCCATTGATCCATTGCTTGAGGAAGCCGATATAGATAAAGATGGAAAAATCAGCTTACCAGAATTTCGTAGACTTCTAAGAACTGCAAGCATGGGTTCTCGACCCATAATGAGCCCAAGTCACCGCCATCGAAAGATTTAA 1689 0.4612 MGICFSATKVSGSSSNNAAASNRNRKGLAAPAPAPPAQPELEPVTGKQKKQPSQAKRRQVPEDSQKNPRSKDKAGARRQGTHVPCGKRTDFGYEKDFENRFSLGKLLGHGQFGYTYVGIDKTNGDRVAVKRLEKSKMVLPIAVEDVKREVKILKELTGHENVVQFHNAFDDESYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARYTAAQALSHPWVREGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEGELSDLKDQFDAIDVDKNGSISLEEMRQALAKDQPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWQQRSQAAFEKFDLDKDGFITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASMGSRPIMSPSHRHRKI* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0651 562 Pfam EF-hand domain pair 407 470 IPR002048 GO:0005509
Gso11g0651 562 Pfam EF-hand domain pair 489 542 IPR002048 GO:0005509
Gso11g0651 562 Gene3D - 402 471 - -
Gso11g0651 562 MobiDBLite consensus disorder prediction 7 23 - -
Gso11g0651 562 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Gso11g0651 562 SMART efh_1 487 515 IPR002048 GO:0005509
Gso11g0651 562 SMART efh_1 517 545 IPR002048 GO:0005509
Gso11g0651 562 SMART efh_1 408 436 IPR002048 GO:0005509
Gso11g0651 562 SMART efh_1 445 473 IPR002048 GO:0005509
Gso11g0651 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Gso11g0651 562 Gene3D Transferase(Phosphotransferase) domain 1 187 381 - -
Gso11g0651 562 SMART serkin_6 101 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0651 562 ProSitePatterns EF-hand calcium-binding domain. 526 538 IPR018247 -
Gso11g0651 562 CDD STKc_CAMK 100 360 - -
Gso11g0651 562 Pfam Protein kinase domain 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0651 562 ProSiteProfiles Protein kinase domain profile. 101 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0651 562 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Gso11g0651 562 SUPERFAMILY Protein kinase-like (PK-like) 98 373 IPR011009 -
Gso11g0651 562 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 552 - -
Gso11g0651 562 ProSiteProfiles EF-hand calcium-binding domain profile. 521 548 IPR002048 GO:0005509
Gso11g0651 562 Gene3D Phosphorylase Kinase; domain 1 94 186 - -
Gso11g0651 562 Gene3D - 382 541 - -
Gso11g0651 562 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 49 552 - -
Gso11g0651 562 MobiDBLite consensus disorder prediction 55 78 - -
Gso11g0651 562 MobiDBLite consensus disorder prediction 1 89 - -
Gso11g0651 562 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Gso11g0651 562 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Gso11g0651 562 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Gso11g0651 562 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Gso11g0651 562 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Gso11g0651 562 SUPERFAMILY EF-hand 393 544 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0651 Gso-Chr11 5836838 5842373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0651 1 555 EF-hand Containing Proteins AT2G17890 73.785 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso11g0651 Pkinase 5.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0651 K13412 - gmx:100805954 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0651 11 5836838 5842373 Gso11g0651 11 5836838 5842373 ECH