Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0642 ATGGGAAGGGTGATTCGCGCACAGCGTAAGGGTGCGGGGTCGGTGTTCAAGTCCCACACCCACCACCGCAAGGGTCCGGCGAGGTTCCGCAGCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAAGGGGTCGTCACCGATATCATCCACGACCCTGGTCGCGGTGCTCCTCTAGCCAAGGTGGCGTTCCGCCACCCCTTCCGCTACAAGAAGCAGATGGAGCTCTTCGTCGCCGCCGAGGGCCTCTACACCGGCCAGTTCATCTACTGCGGCAAGAAGGCCACCCTCGTCGTCGGCAACGTCTTGCCCCTCCGATCCATCCCCGAAGGTGCCGTTATCTGCAACGTCGAGCACCACGTTGGCGACCGCGGCGTCTTCGCCAGAGCCTCCGGTGACTATGCCATTGTTATCAGCCACAACCCTGATAACGACACCTCTAGGATCAAGCTTCCTTCTGGGTCAAAGAAGATTGTGCCTAGTGGGTGCAGGGCGATGATTGGGCAGGTTGCAGGTGGAGGGAGGACTGAGAAGCCTCTTCTGAAAGCTGGTAATGCTTATCACAAATTCAGAGTGAAGAGGAATTGCTGGCCTAAGGTGCGTGGTGTGGCGATGAACCCAGTTGAGCATCCTCATGGAGGAGGTAATCACCAGCATATTGGTCATGCCAGTACCGTCAGGCGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTTAGGGGGCAAGCTGCTGCTACTGCTGCTAAAGCGGATAAGACCACCTGA 786 0.584 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVAFRHPFRYKKQMELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKTT* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0642 261 Gene3D - 1 86 IPR012340 -
Gso11g0642 261 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gso11g0642 261 Gene3D - 90 169 IPR014722 -
Gso11g0642 261 PANTHER RIBOSOMAL PROTEIN L2 1 258 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gso11g0642 261 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gso11g0642 261 Hamap 50S ribosomal protein L2 [rplB]. 1 246 IPR023672 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Gso11g0642 261 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Gso11g0642 261 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Gso11g0642 261 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gso11g0642 261 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Gso11g0642 261 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Gso11g0642 261 MobiDBLite consensus disorder prediction 210 230 - -
Gso11g0642 261 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Gso11g0642 261 PANTHER 60S RIBOSOMAL PROTEIN L8-1 1 258 - -
Gso11g0642 261 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0642 Gso-Chr11 5729341 5730893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0642 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 94.961 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0642 K02938 - gmx:100798311 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0642 11 5729341 5730893 Gso11g0642 11 5729341 5730893 ECH
Gso11g0642 11 5729341 5730893 Gso2g0420 2 4409375 4411143 PCT
Gso11g0642 11 5729341 5730893 Gso16g1045 16 28501695 28503470 PCT
Gso2g0420 2 4409375 4411143 Gso11g0642 11 5729341 5730893 PCT
Gso16g1045 16 28501695 28503470 Gso11g0642 11 5729341 5730893 PCT