Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0641 ATGGATCGATCAAAGAATTCGAAGACAGTACGCTGGGCTCAAGAATCTAGTCTTCGTGAGGTGCATGTTTTCTCACCTGATAAAGATTGTTCTTCAATGGTTGGCAAAAAATGTCAAGAACATCTTCAAGCAAAATCATCATCAATATCGCCTTCAACTACGGATGATAATAATGATTTACCACCTGGTTTTAGACCCATTATTGATGTCTCTAGAATTCCTCAAATTAAATGGAAATGTCCTCCTTCGGTTGTTTTGAATTCTGGGTGGCGTATGGCAGCTGGTGAAGAAAGTACAGAGAAAGATAATCAGAAGCAAAGAGAACTGAAAAAGCTTGAAGCAGTTTATCCTCGTGATTCTCACATTCCTGCTGATCCTTTTGTTTCTTCGGATGTGGAGAATGAATTAGGTTACGATGATAGCGACACTCCTCTGGTCCCTCTTGAGTCCGAAGAGGATGTGGAGAATGAATTAGGTTACGATGATAGCGACAGTACTCCTCTGGTCCCTCTTGAGTCCAAAGAGGATATTGCTATTTCAACAGTACCCCCGTCAAATCTGGGGGAGGCAGATGTTGCTACAGCTTTGGCTACTGTAATGGCCATCGTAAAACACAATGAGGAACCAGGGAACTCCATTATTGATGCGAATTTCATCCTTCGATTGGCCAATGACCCGAAAATGTTGAAAGAATTGACTGATTCAAACAATAATAATCCTGAAAATGCATCTCTCACTATGCCTGCACCTCCTCAAATTACAGCAACAGCACAAACATCTCCACCACCTTCTCTGAAACGAGGAACAAAGCGAGCAATACCATCTGGGAGCGAAAGGAAAAGTTGCTCCGAACAGGCGTGGCCCTCTGGTGGTTCAGTGTCTTCGTCTCAACCACGTGTTGTGAAGAAAGATGTGGATTATTATAGGAACCAAGTAACAAAAAATGACTCTGGCAAGGTTAATAAACAATGCAAATTCTACAACACTTCGAAGGGTTGCCGCAATGGCTCTCGTTGTCGCTTTCAGCATACCTCAGTTTGGAAGATGTGA 1050 0.4257 MDRSKNSKTVRWAQESSLREVHVFSPDKDCSSMVGKKCQEHLQAKSSSISPSTTDDNNDLPPGFRPIIDVSRIPQIKWKCPPSVVLNSGWRMAAGEESTEKDNQKQRELKKLEAVYPRDSHIPADPFVSSDVENELGYDDSDTPLVPLESEEDVENELGYDDSDSTPLVPLESKEDIAISTVPPSNLGEADVATALATVMAIVKHNEEPGNSIIDANFILRLANDPKMLKELTDSNNNNPENASLTMPAPPQITATAQTSPPPSLKRGTKRAIPSGSERKSCSEQAWPSGGSVSSSQPRVVKKDVDYYRNQVTKNDSGKVNKQCKFYNTSKGCRNGSRCRFQHTSVWKM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0641 349 MobiDBLite consensus disorder prediction 41 59 - -
Gso11g0641 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 345 - -
Gso11g0641 349 MobiDBLite consensus disorder prediction 230 302 - -
Gso11g0641 349 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Gso11g0641 349 SUPERFAMILY CCCH zinc finger 324 346 IPR036855 GO:0046872
Gso11g0641 349 MobiDBLite consensus disorder prediction 276 299 - -
Gso11g0641 349 MobiDBLite consensus disorder prediction 122 169 - -
Gso11g0641 349 MobiDBLite consensus disorder prediction 230 265 - -
Gso11g0641 349 MobiDBLite consensus disorder prediction 41 62 - -
Gso11g0641 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 345 - -
Gso11g0641 349 MobiDBLite consensus disorder prediction 145 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0641 Gso-Chr11 5719579 5722644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0641 75 147 Homeobox Transcription Factor Family AT4G02560 41.096 3.56e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso11g0641 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0641 - - gsj:114373954 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0641 11 5719579 5722644 Gso11g0641 11 5719579 5722644 ECH
Gso11g0641 11 5719579 5722644 Gso2g0424 2 4433955 4442287 PCT