Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0640 ATGAAGCGTTCAAGGAAATTGAAGAAGGTTTCATGGGCTCCTGGATCTAATCTATGCCAGGTAAAATTGTTCTTATCTGAGGATCTCCCTTCAAAAGTTGGCGAGAAATTTCAAGATCATTTTCAAGCAAAGAAAATGTCAATAGGGTCTTCAGATGATTTTCCTCCTGGTTTTGAAGACAATCATTTGCGAAATCAATCAAAGGCTAAACTCTCTCACATCCCTCAGATTAAATGGGAATGCCCTTCTTTGTTCACTTTGAGTAATGATTGGCGCGTTGCAGCTGGTGAAGACAGTACGGAGACATGTGATCAGAAGTTAAGAGAAATGAGAGTGCCTGAAGCAATTTATCCTCGTATTTCTGCCATTCCTGATGGACCTTCTGAATCGGAGAAGGAATTTTATGATGATAATGAAAGCCTCATTCCTCTCATCCCTCTCATTCCTGTTGAGGAGGAAGAAGAGTCAGCAGAGGATATTGAACCTGACTCTTCCATCAAAAAATTGCATAAACAAAACTCTCAGCAGCAATATATACCACCGGCAATATCTCTTGTTAACCCAGAATGCAGCAATGTTAATTCACATTGCAGTGGAAAGCCATTAGGTGCAACATCTTCTGAGGCAGATATAATTGCAGCAGCTTCTTCTGCTGCTGTTGCTTCCATCATAAAAAGGAATGAGCAAGGAACCTTGATTGATATGGATTTGCTCGTTAAATTATTTACTGACCCAACAATGATTGAGAAATTAATTGAGCAAAATAGAACTGCTACCACCACTGTCAGTGTCAGTGCCCCCTCAAGTATTTTGAGTATACCAACTTCTTATTCTAAACCTGCAGCTGTAGCATCTGAGACTACACCAACAACCACAAGGCCATCAATTACATCTGTTCCATCTGTTTCATTGCCTAAGCCTGTACCTCCTCAAACAGTAACAAGGCATAAACCTCCATCAATACCTACACCTCATATGCACAGGCCTGTCAAGAAAAATATTCCCCATATGGCAAATAGAGTGCTTCCCTCTTTAAACACTCACTCTCCACAACAAGGGCTAAAGAGAGCAGCACCATCATTGGCTTCTGTTTCTTCCAGTGAATTGAAAACAGTGACAGTGTCTTCTGCTTCTGCAAACATGCATGCAGTTGAAAAACAGGTGCAGTCCACCACAACTGGTGCCGTTAAGGATGTCAATTATTACCTAAACCTGGTTAAAGAACATGGTACTCATAAGCAAGCTGGCAACAAGAGTCTTAAGAACTTACAAGGTTTGAAACCGTCACAGGGAGAAGTGAAATTCAAAAGTAAGAAACCATGCATATACTTTAGAACTAAAAGGGGTTGCCGTAATGGTTCTGACTGCCCTTATCAGCATGATATGTCAAATCGGGGGGAAGCTGGTAAAGTCCTAATGGCTCAACAAAATGCTAAAAGATTGAAAGTAGGACCAGAAATTAAGGGGAGGCTATATACTTAA 1482 0.4076 MKRSRKLKKVSWAPGSNLCQVKLFLSEDLPSKVGEKFQDHFQAKKMSIGSSDDFPPGFEDNHLRNQSKAKLSHIPQIKWECPSLFTLSNDWRVAAGEDSTETCDQKLREMRVPEAIYPRISAIPDGPSESEKEFYDDNESLIPLIPLIPVEEEEESAEDIEPDSSIKKLHKQNSQQQYIPPAISLVNPECSNVNSHCSGKPLGATSSEADIIAAASSAAVASIIKRNEQGTLIDMDLLVKLFTDPTMIEKLIEQNRTATTTVSVSAPSSILSIPTSYSKPAAVASETTPTTTRPSITSVPSVSLPKPVPPQTVTRHKPPSIPTPHMHRPVKKNIPHMANRVLPSLNTHSPQQGLKRAAPSLASVSSSELKTVTVSSASANMHAVEKQVQSTTTGAVKDVNYYLNLVKEHGTHKQAGNKSLKNLQGLKPSQGEVKFKSKKPCIYFRTKRGCRNGSDCPYQHDMSNRGEAGKVLMAQQNAKRLKVGPEIKGRLYT* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0640 493 MobiDBLite consensus disorder prediction 303 317 - -
Gso11g0640 493 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 483 - -
Gso11g0640 493 MobiDBLite consensus disorder prediction 282 302 - -
Gso11g0640 493 MobiDBLite consensus disorder prediction 282 329 - -
Gso11g0640 493 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Gso11g0640 493 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0640 Gso-Chr11 5711347 5714978 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso11g0640 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0640 - - gmx:102661234 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0424 2 4433955 4442287 Gso11g0640 11 5711347 5714978 PCT