Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0637 ATGTCCGCCGCCGAAGAAGCTAAAGTTCCCGCCGTCGAAAAGCCGGTGGAGGAGGTGAAGGCGCCGAAGCTTGCCAAGGAGAAGAAACCTAAGGCTCCGAAGGAAAAGAAGCCGAAACAGGCCAAAACTGCTTCTCATCCTCCATATCTCCAGATGATTAAGGACGCTTTGATTGCTCTGAACGAGAAAGGAGGATCGAGTCCATATGCGATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTTCCTGCGAATTTCAAGAAGATACTAGGTCTGCAACTGAAGAACCAAGCTGCGAGAGGGAAACTCGTCAAGATCAAGGCTTCGTACAAGTTAGCCGAAGCCGCGAAGAAGGTGAAGGAGAGCACCGCCAAAGCGACGAAGGAATCGCGTCCGAAACGAAACAAAATCGCAACCGCCGTTGCTCCGAAGAAAACCGAGGCGGTTAAAAAGCCCGCGAAGAAGGTCGGGCCGAAGAAAACGAAGAAAGTGTCGACGCCTGCGAAGCCCAAGCAGCCCAGGTCCATTAGGTCTCCGACCAAGAGGGCCCGTAAAGCTGCCGTCGCTGCGGCTTGA 579 0.5389 MSAAEEAKVPAVEKPVEEVKAPKLAKEKKPKAPKEKKPKQAKTASHPPYLQMIKDALIALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIKASYKLAEAAKKVKESTAKATKESRPKRNKIATAVAPKKTEAVKKPAKKVGPKKTKKVSTPAKPKQPRSIRSPTKRARKAAVAAA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0637 192 SUPERFAMILY "Winged helix" DNA-binding domain 42 124 IPR036390 -
Gso11g0637 192 CDD H15 43 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso11g0637 192 MobiDBLite consensus disorder prediction 1 48 - -
Gso11g0637 192 PANTHER HISTONE H1 6 188 - -
Gso11g0637 192 Pfam linker histone H1 and H5 family 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso11g0637 192 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso11g0637 192 MobiDBLite consensus disorder prediction 10 31 - -
Gso11g0637 192 MobiDBLite consensus disorder prediction 119 192 - -
Gso11g0637 192 Gene3D - 40 132 IPR036388 -
Gso11g0637 192 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso11g0637 192 PANTHER HISTONE H1 6 188 - -
Gso11g0637 192 MobiDBLite consensus disorder prediction 119 136 - -
Gso11g0637 192 PRINTS Histone H5 signature 32 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso11g0637 192 PRINTS Histone H5 signature 59 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso11g0637 192 PRINTS Histone H5 signature 139 153 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso11g0637 192 PRINTS Histone H5 signature 175 192 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0637 Gso-Chr11 5699743 5700731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0637 33 113 Single Myb Histone (SMH) Gene Family AT1G72740 37.037 5.44e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0637 K11275 - gmx:100797229 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0637 11 5699743 5700731 Gso11g0637 11 5699743 5700731 ECH