Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0636 ATGGAGTCGATGGAGTCATGTGTCCCACCAGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTATTATCTCAGGAAGAAAGTCGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGATGCAGGATAGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCTGGGTTTTGGAAGGCGACAGGAAGAGACAAAGCAGTGTATGAAAGAGCAAAACTTATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAAGTGATTGGATCATGCACGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCACAGGAGGAAGGTTGGGTTGTGTGCAGAGCCTTCAAGAAGAAAACCACTGGGCAAACGAAGACTATAAATATTGAAGGATGGGAGTCAAGCTACTTCTATGACGAAGCAAGTGGGGCAACAAGCACTTTGGTCGATCCAATTGAACTCATTTCAAGGCAATCTCAGAGCTTTCTGGCTCAAAATTTCATGTGCAAGCAAGAGCTAGAAGCAGATAACTTGACTTGCATGCATCAAGATCCGTTTGTGCAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCACTAGTAAAGAAGCCAAGCACAGTGTCCCTAGTATCAGACAATAATAACGAAGGTGAAGACAATCAAAACAGGTTGTTATTCAACAACAACAACACAAAGAAAGTCACTACTGATTGGAGAGCCCTTGACAAGTTTGTAGCCTCTCAACTAAGTCAAGAAGTAAACACGCATGAAACTAATGTTGGAGTACTCTCATCAAGCTTTGAACCCCATGATGATAACCACGACATGGCACTGCTGCTACTGCAGAGTAGTAGGGATGAAGGGAACAGGTTAAGCCCGTTTCTAAATACAAGCTCCGACTGTGACAATGGGATATGCGTATTCGAAAAATGA 1047 0.4336 MESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYERAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTINIEGWESSYFYDEASGATSTLVDPIELISRQSQSFLAQNFMCKQELEADNLTCMHQDPFVQLPQLESPSLPLVKKPSTVSLVSDNNNEGEDNQNRLLFNNNNTKKVTTDWRALDKFVASQLSQEVNTHETNVGVLSSSFEPHDDNHDMALLLLQSSRDEGNRLSPFLNTSSDCDNGICVFEK* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0636 348 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Gso11g0636 348 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 328 - -
Gso11g0636 348 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 328 - -
Gso11g0636 348 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Gso11g0636 348 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Gso11g0636 348 ProSiteProfiles NAC domain profile. 8 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0636 Gso-Chr11 5689965 5694837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0636 1 347 NAC Transcription Factor Family AT2G18060 63.934 3.42e-162 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g0636 NAM 7.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0636 - - gmx:100802758 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0636 11 5689965 5694837 Gso11g0636 11 5689965 5694837 ECH
Gso11g0636 11 5689965 5694837 Gso2g0426 2 4460912 4464707 PCT
Gso11g0636 11 5689965 5694837 Gso16g1049 16 28568179 28572154 PCT
Gso2g0426 2 4460912 4464707 Gso11g0636 11 5689965 5694837 PCT
Gso16g1049 16 28568179 28572154 Gso11g0636 11 5689965 5694837 PCT