Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0635 ATGCCTGGTTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTGGGCGCGGCGGCCGCCCTAGTATTCTCCTGTATGGGAGCGGCGTACGGCACGGCCAAGAGCGGGGTCGGCGTTGCGTCGATGGGCGTCATGAGACCGGAGCTGGTCATGAAATCCATCGTCCCGGTTGTTATGGCCGGAGTGTTGGGAATCTACGGCTTGATCATCGCCGTCATCATCAGCACCGGTATTAACCCTAAGGCCAAATCCTATTACCTCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTCTCATTCTCATCTTTGCTGAGGCGTTGGCATTGTATGGACTCATTGTTGGCATCATCCTCTCTTCACGTGCTGGCCAATCCAGAGCTGATTAG 495 0.5677 MPGFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0635 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Gso11g0635 164 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Gso11g0635 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Gso11g0635 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Gso11g0635 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso11g0635 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso11g0635 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso11g0635 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gso11g0635 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 164 - -
Gso11g0635 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Gso11g0635 164 Gene3D - 10 161 IPR035921 -
Gso11g0635 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 164 - -
Gso11g0635 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gso11g0635 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0635 Gso-Chr11 5670223 5672244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0635 1 164 Primary Pumps ATPases(2) AT2G16510 98.171 2.75e-110 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0635 K02155 - gmx:100796361 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0635 11 5670223 5672244 Gso2g0427 2 4481751 4484197 PCT
Gso11g0635 11 5670223 5672244 Gso16g1050 16 28607490 28610069 PCT
Gso2g0427 2 4481751 4484197 Gso11g0635 11 5670223 5672244 PCT
Gso16g1050 16 28607490 28610069 Gso11g0635 11 5670223 5672244 PCT