Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0629 ATGGAGCAGCCGCTTCAACCGCAGCCAGAGACTGCCGCGGGCGGTGCTAGGGATTCGGAGGGCTCGCGGTTGGTTGGAGTTCCCGTCGCGGTCGCTCGCGATGCTGACGTGGCGGAGAGAGAGGGGAACAGTTGCGCGCCGAATTTGCAGGTCACCGTCGTGGACGTCGGTGCCGTTTTGAAACGGAAGCGCGGCCGGCCGGCCAAGGGAGCTCCGAAAGTGGTGCCTCCGGTGAGGCAACAGCAGGACGAGGAGGATGTTTGTTTTATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGCCGGGGATGTCCAAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGAAGAGTTTTTTCGATCAAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGTTTGTCAGAAGTCGTCACAATATATGTGCTATACTTGCACGTACTCTTTGTGTAAGGGATGCACAAAAGATGCTGATTTTGTTTGTATCAGAGATAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGATGATTGAGAACAGTGCCCAGGGAAATAACGAAAAGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGAAAGCTATCTTTAACATTTGATGAGCTCCTTCGAGCTAAAAACCCATGGAAAGGTGCTGCTCCTATGAGTTATAAGATTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGGTAAGGGTGATTGCTTGGATAGGATAACTTCAGGTGGTGACAGTGGTGTGTCTTTGCCTGAATGCACAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCGCATATGAAAAATGGTGATACATCTCTCATGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGCAAATAAAAATAATCTTCGTGATCCTCAACAGAAGTCCCAAATTGTTTGTGACTCTAGACTTTTAAATTTGTTTGGAAAAGCACGTGTTGGCCACATTGAAATGCTAAAGCTCCTTGAACCCCACTTTCTTTTAAAAGACAATGGCCCTGCAGAAAATACTTTTGGAGCAGGAATTATTAATGTTGTTGCTAATGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTAGTTGATGACAAGAGATGTAAGACACATAATCCAGATGCATATGCTGCTATAGATGTGCACAACATTAAGTTGATCTACATGCAGAGAAGTCTGATGGAGAATCTAACTGAAGATGCTGAAAAGATTCATGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCTAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCTTACAAAATTGGCACAAGAACAACAGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGCCATATCCATTTCTGAAATTTCTAATCAGGAGTTCTCTGAGGACGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCAGTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAACTTAAAGAATATGTGGAGAAGTTGCAGCTACTAAACTCTCCGGAGGAACGTCAACGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCCAATTTGGATTCAATGTTTGAGTCCGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATAGCAACATATTTTCAAAATATCTTGGGTTTGATAGAAAAGAGAGGGGTTCTATTTTTCCAAGAATTTCGAATGGCATCTCCAACGACATGGGAAGCAAAACACAAGACTTGCCTGCTACCCAAGAACCGGTTGGGAATACATGCACATTGAAGAATAATATCAACTCTGATGATACAGCTATTGATGATAGCACTAATGCAGTTGTGAAATCAGAAGTGTCCAGTGTTGCAGTGGAAGTTTCATCATCGCTTCTGTCTACTGGGATGCAGCAGTCATTTAATGATTTTTTGAATGATAGATCATGGCATTATCAGGATCCAACTGGGAAGATTCAAGGACCTTTTTCTATGTTGCAGCTGTACAAGTGGAATGCAAGTGGATGTTTCCCTCCAGATCTCAGAATATGGAGGGTAGGTGAGAAACAAGATAACTCTATACTGTTAACCAATGCACTAAGTGAGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAGCCAATTGCTCTCTCTAGGGGTCAGTGTTACATTGGATGATAAAGGTAATAGTCAGGATGCTGGGAAGAATGCAAAGAATGAAATTTCTACAGATGGCCAAATTATTGAACAGACAAAGGAACAAAAGCCACAGGTGGATAATACCTCTACCCAGTCTGATGGCAAAGATGAACCGGTTAGGAGCAATGGATGTTCCAGCCAGCTGCCTGTATACCCTTTGCTACTGTCAACTGCCATTCCTGAGAAATTGAATGAGAATACTTCTGATAAATTAAGGAAAGGCCATGCAATTGTGGGAAATTCCGAAAATAGAAATAATGGCTCGAACAGGACATCTGATGTGCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAATCAGACAGTGAAGAGAATTCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTAAATAGTTCTTCCAATTGCTTGGTTACCACGTCTGCTCATGTTTCTAGTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAGCATGTAATACATCTACATGGCAGGCAATCATTGGTGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGAGGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGTTTTGTTGCAGAGCTTAGCCCAATTCTTGATGCGGGTAAAGGTGATGCCCTGAGCTCCACTGGTGATTTAAACTTACCATCTCACCCGACAGCAGCTGAGGAACCATTACGACAAGCAGATGTGCATCACCATCATCATCAAAGAATTTCTGCGGAGGATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAGAACGGTGTTTCAGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCATTGTTCCATCCCCTGGAACATTGGGCCTGGCTATAGACACCACTTGGAGACTTGGCTTAGAGAATACACACTTGGGATGGAGTGGAATAGATCAAGGAAATGCAAATGTGGGTTGGGGAGTAGGACAGACTGCAGTGCAGGAAAACAGAAGTTCAAGTTCGTACACTTCTACAGTAACTCCAGGCCTTGGGGATAGCCAAACAAGATATGGCAGTGATCGATTTTCTGTGTCCAGAGATCGGGGTTTTCAAGGTCATGGTAGGGAATCAGGTTTTAGTAGAAGCAGAATTCCATATAACAGGCAACCGTCATATGGTGTTGGAAATGGAGGATCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 3828 0.4303 MEQPLQPQPETAAGGARDSEGSRLVGVPVAVARDADVAEREGNSCAPNLQVTVVDVGAVLKRKRGRPAKGAPKVVPPVRQQQDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEEFFRSKAKWNCGWHICSVCQKSSQYMCYTCTYSLCKGCTKDADFVCIRDNKGLCGICMRTIMMIENSAQGNNEKCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKGAAPMSYKIQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLGKGDCLDRITSGGDSGVSLPECTKWASKELLEFVAHMKNGDTSLMSQFDVQTLLLEYANKNNLRDPQQKSQIVCDSRLLNLFGKARVGHIEMLKLLEPHFLLKDNGPAENTFGAGIINVVANEGEAIDNYNKQLMLVDDKRCKTHNPDAYAAIDVHNIKLIYMQRSLMENLTEDAEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEAISISEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKAVTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRKERGSIFPRISNGISNDMGSKTQDLPATQEPVGNTCTLKNNINSDDTAIDDSTNAVVKSEVSSVAVEVSSSLLSTGMQQSFNDFLNDRSWHYQDPTGKIQGPFSMLQLYKWNASGCFPPDLRIWRVGEKQDNSILLTNALSEKCSKNVSLPFNSQLLSLGVSVTLDDKGNSQDAGKNAKNEISTDGQIIEQTKEQKPQVDNTSTQSDGKDEPVRSNGCSSQLPVYPLLLSTAIPEKLNENTSDKLRKGHAIVGNSENRNNGSNRTSDVQSNSGQSYQKQSDSEENSGQSSGQTWRHPNVNSSSNCLVTTSAHVSSTKTSPHKLGFDLHNPPSPPACNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEDLTEGSKNDCLSFVAELSPILDAGKGDALSSTGDLNLPSHPTAAEEPLRQADVHHHHHQRISAEDSSRSSKVEVGTKNGVSGNQWDSGSENSPIVPSPGTLGLAIDTTWRLGLENTHLGWSGIDQGNANVGWGVGQTAVQENRSSSSYTSTVTPGLGDSQTRYGSDRFSVSRDRGFQGHGRESGFSRSRIPYNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP* 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0629 1275 SMART rtf1 435 545 IPR004343 GO:0003677
Gso11g0629 1275 Pfam GYF domain 748 790 IPR003169 GO:0005515
Gso11g0629 1275 Coils Coil 569 589 - -
Gso11g0629 1275 Gene3D - 747 803 IPR035445 -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 1112 1132 - -
Gso11g0629 1275 ProSiteProfiles Zinc finger PHD-type profile. 85 151 IPR019787 -
Gso11g0629 1275 ProSiteProfiles SWIB/MDM2 domain profile. 302 385 IPR003121 -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 610 646 - -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 1091 1111 - -
Gso11g0629 1275 SUPERFAMILY GYF domain 742 798 IPR035445 -
Gso11g0629 1275 CDD GYF 745 798 IPR003169 GO:0005515
Gso11g0629 1275 ProSiteProfiles Zinc finger C3H1-type profile. 1250 1275 IPR000571 GO:0046872
Gso11g0629 1275 SMART gyf_5 746 801 IPR003169 GO:0005515
Gso11g0629 1275 SMART swib_2 327 388 IPR019835 -
Gso11g0629 1275 SUPERFAMILY FYVE/PHD zinc finger 82 140 IPR011011 -
Gso11g0629 1275 ProSitePatterns Zinc finger PHD-type signature. 88 148 IPR019786 -
Gso11g0629 1275 SUPERFAMILY SWIB/MDM2 domain 307 384 IPR036885 -
Gso11g0629 1275 Gene3D - 436 565 IPR036128 GO:0003677
Gso11g0629 1275 MobiDBLite consensus disorder prediction 1 25 - -
Gso11g0629 1275 CDD PHD5_NSD 87 132 - -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 911 961 - -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 1091 1132 - -
Gso11g0629 1275 ProSiteProfiles GYF domain profile. 745 799 IPR003169 GO:0005515
Gso11g0629 1275 SMART PHD_3 87 133 IPR001965 -
Gso11g0629 1275 Pfam SWIB/MDM2 domain 310 383 IPR003121 -
Gso11g0629 1275 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 16 979 - -
Gso11g0629 1275 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 986 1275 - -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 909 961 - -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 827 878 - -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 1180 1206 - -
Gso11g0629 1275 SUPERFAMILY CCCH zinc finger 1250 1274 IPR036855 GO:0046872
Gso11g0629 1275 MobiDBLite consensus disorder prediction 1180 1245 - -
Gso11g0629 1275 CDD SWIB-MDM2_like 308 383 - -
Gso11g0629 1275 Gene3D SWIB/MDM2 domain 301 390 IPR036885 -
Gso11g0629 1275 MobiDBLite consensus disorder prediction 610 629 - -
Gso11g0629 1275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 176 IPR013083 -
Gso11g0629 1275 SUPERFAMILY Plus3-like 436 564 IPR036128 GO:0003677
Gso11g0629 1275 Pfam Plus-3 domain 440 543 IPR004343 GO:0003677
Gso11g0629 1275 ProSiteProfiles Plus3 domain profile. 435 568 IPR004343 GO:0003677
Gso11g0629 1275 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 986 1275 - -
Gso11g0629 1275 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 16 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0629 Gso-Chr11 5604605 5611173 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0629 85 165 PHD Transcription Factor Family AT4G14920 34.568 1.19e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Gso11g0629 Plus-3 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0629 - - aprc:113869503 2137.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0629 11 5604605 5611173 Gso11g0629 11 5604605 5611173 ECH