Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0623 ATGGGTCGAGGCAAGATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACTTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTTATCATGTTCTCTAAAAACAACAAGATGCATGAATACATTAGCCCTGGCCTCACGACAAAAAGGATCATTGATCAGTATCAGAAGACTTTGGGGGATATTGATCTGTGGCGTTCTCACTATGAGAAAATGCTTGAAAACTTGAAGAAGCTGATAGATATTAACAACAAGCTCAGAAGACAGATCAGAAAGCTCATTGGTGGAGTTGTCTTGTGTGAATTGGAAAGGCATAGGATAGGTGAGGGTTTGGACATGGACGACATGAGCTTCCAGCAACTGCGCACTCTTGAAGAGGATTTGGTTTCTTCCATAGGGAAAATACGAGAACGAAAGTTCCACGTGATCAAAACACGGACTGATACCTGCAGGAAAAAGGTTAAAAGCCTGGAGCAGATGAATAGAGATCTGCTGTTTGAACTTAAGGAAAAGTGTGCGATCCATCCACAATTTATTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAACGGCGCCTCCACCCTGTATGCGTTCTGTCATCAGCACCATTCTCATCTGAACCTTCCCTCCCACCATTCTCACGGAGAAGAACCCTTTAAAACTGATGACCTTCGCCTTGCTTAA 744 0.4409 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLIDINNKLRRQIRKLIGGVVLCELERHRIGEGLDMDDMSFQQLRTLEEDLVSSIGKIRERKFHVIKTRTDTCRKKVKSLEQMNRDLLFELKEKCAIHPQFILHDEGDEESAVALANGASTLYAFCHQHHSHLNLPSHHSHGEEPFKTDDLRLA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0623 247 Coils Coil 85 105 - -
Gso11g0623 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g0623 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g0623 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso11g0623 247 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 246 - -
Gso11g0623 247 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gso11g0623 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 246 - -
Gso11g0623 247 Pfam K-box region 83 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g0623 247 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gso11g0623 247 MobiDBLite consensus disorder prediction 229 247 - -
Gso11g0623 247 ProSiteProfiles K-box domain profile. 85 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g0623 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso11g0623 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso11g0623 247 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gso11g0623 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso11g0623 247 MobiDBLite consensus disorder prediction 227 247 - -
Gso11g0623 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0623 Gso-Chr11 5540765 5543839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0623 1 242 MADS-box Gene Family AT3G54340 46.721 1.67e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso11g0623 K-box 2.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0623 K09264 - gmx:100791963 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0623 11 5540765 5543839 Gso11g0623 11 5540765 5543839 ECH