Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0612 ATGGCGGGTTTATTCTCACTAGGAGGTAGTAGAGGTAACACCAATCCCCAAGAGGAAATCCCTCCTCCGGATACCTTATTCTGGTGTAACAAGAATGATGACGTTTCCTCTTACCACCGAGGTAGTAGCGGCTTTGAGCTATGGAACCAGCAACAGCTTCAACATCAGCAACAACAGCTCATGGGCCATGACCCTCCTCCGCAGCCGCGCCCTCTCTTTCACCAAGATCTCTACTCCGCGTTGGGCGTTGGGCCCAGCAGGCCCATCTCTGACGATCAGTCGTCTTCGAGATCCAGTTTCCTTCTTGGAGCAAGCGGTGGCGGTAGCGCAGGAGGAGGGATTAGCTGTCAGGACTGCGGGAACCAAGCTAAGAAAGACTGCCCTCACATGCGGTGCAGAACTTGCTGCAAGAGCCGCGGCTTCGATTGCCAAACCCATGTCAAGAGCACTTGGGTCCCCGCTTCACGTCGTCGCGAACGACTACAACAACTTTCTGCGTTGCAACAACACCAACAACAACAACAAACCCTCGAACCTGCTTCTTCTGCTGGAGGAGACCTTCCCAAAAGGCACAGAGCGAGAGATCATCATCATTCTCCTCTCGCCTGCACTCGCTTCCCTTCTAACCCCTCCTCCTCAGGGTTAGAGGAGGTGAATTTCCCGGCTGTGGTGAGGTCTGCTGCGGAGTTCAGATGCGTACGTGTGAGTTCCATGGACGAGGAGGCGGAGGAGGAGTACGCATACTCAACGGCTGTGAACATTGCAGGACATGTGTTCAAAGGAATTTTATATGACTATGGTCCAGAAGGTATGAACACTAATTACATGGATGCTGTTGCTGCTGCTGGGGAAAGCTCTTCCACCGGTGTTGGTGCCTTGAACCTAACCACTGGTGCCATTGTTTCGGAGCCACTCGGAGTTGATCCTTCTTCCTTGTATCCGGCTCCTCTTAACTCCTTCATGCCTGGTAGCGGTACGCAATTCTTCCCTCACCCACGATCTTGA 1005 0.5313 MAGLFSLGGSRGNTNPQEEIPPPDTLFWCNKNDDVSSYHRGSSGFELWNQQQLQHQQQQLMGHDPPPQPRPLFHQDLYSALGVGPSRPISDDQSSSRSSFLLGASGGGSAGGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQLSALQQHQQQQQTLEPASSAGGDLPKRHRARDHHHSPLACTRFPSNPSSSGLEEVNFPAVVRSAAEFRCVRVSSMDEEAEEEYAYSTAVNIAGHVFKGILYDYGPEGMNTNYMDAVAAAGESSSTGVGALNLTTGAIVSEPLGVDPSSLYPAPLNSFMPGSGTQFFPHPRS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0612 334 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 220 268 IPR006511 -
Gso11g0612 334 MobiDBLite consensus disorder prediction 88 103 - -
Gso11g0612 334 MobiDBLite consensus disorder prediction 163 214 - -
Gso11g0612 334 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 334 IPR007818 GO:0003700|GO:0006355
Gso11g0612 334 MobiDBLite consensus disorder prediction 163 181 - -
Gso11g0612 334 MobiDBLite consensus disorder prediction 1 26 - -
Gso11g0612 334 MobiDBLite consensus disorder prediction 51 104 - -
Gso11g0612 334 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 334 - -
Gso11g0612 334 Pfam Domain of unknown function (DUF702) 113 269 - -
Gso11g0612 334 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 115 157 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0612 Gso-Chr11 5459937 5463090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0612 1 334 C2H2 Transcription Factor Family AT3G51060 42.105 2.76e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso11g0612 DUF702 1.8e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0612 - - gmx:100797973 613.994