Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0606 TACACCATGGGATTCTACACACAGAACCTTTTTTCTTCTTTCACCTCAGCTTCATCATGGTTCGAGGTGTACGCTGCCTTCTCCACATTCACGATGCTCCTCAGAACAGCATTCATTCAACTCATTCCCCAGCAATTCCGATCCTTCATTGTCTCAAAGCTAGAGTCCTTCTTCTCCAAATACCAAGCAAATAGCGAAATCCGTCTAAAAATTAACAAATTTTGGGACAAAAATTCGGGAGACCGCAATGAACTTTTCGATGCTGCCCAGGAGTACCTCCCCACCAGGATTATTCACACCTACAAGTCGCTCAAAGTTGGCAAACTACAAGGCGAGAAGCACATTGAGCTCGCAGTGTATGGAAGTGAAGATGTGGTGGACGAATTTGAAGGCACCAAATTCACTTGGAAGCTGGATGAAGAAGGGTCCAAACAGGACTCTAATAATCACAACAAGAAGTATAGCTTTGAATTAACCTTCAATGAGAAGCATAGAGAGAAAGCATTGGATCTGTATATTCCACATGTGATTAAAACATATGAGGTCATGAAAGCTGAGAGGAGGATTGTAAGGATCTATTCTTGGTTAGATGATGATTGGAACGATAGCGAGTTATCACATCCTGCCACATTCGACTCACTGGCCTTGAGTCCCGAGTTGAAGAAAGATATCATTGATGATTTGGAACGGTTCCTGAGGAGGAAGGAGCATTACAAGAAAGTGGGGAAGCCTTGGAAACGTGGCTACTTGTTGTATGGACCTCCTGGAACTGGAAAATCAAGCCTTATTGCGGCGATGGCGAACTACTTGAAATTCGATGTGTATGATTTGGAGCTTACTTCTGTTTATTCTAACTCGGACCTCATGCAATCCATGAAGGAAGCATCTAACCGTTCCATCGTTGTGATTGAAGATATTGACTGCAATGAAGAGCTGCACGCTAGATCAATTGGTCTTTCAGATGATCAAGATTCAGACGCTGACAATGAGGCTGCCAAGGTTAAGACAAGTAGGTTTAGTCTGTCGGGTCTGCTTAACTACATGGATGGTTTGTGGTCAAGCGGAGGAGAGGAGCGGATTATAATATTCACAACCAACCACAAAGAAAAAATAGACCCTGCTTTGTTGCGCCCGGGTCGTATGGACATGTACATTCACTTGTCCTACCTAAAAGGCAAGGCATTTCGAGTCTTGGCTTCCAATTATTTGGATATTGAAGGAGATCATCCACTCTTTGAAGAAATTGATGAGCTATTGGAGAAATTACAAGTCACCCCTGCAGTAGTAGCAGAGCAACTGATGAGAAATGAGGATCCTGATGATGCTTTGGAAGCCCTTGTTACATTTCTCAAAGAAATGGACAAGGATAGTAATTGTGACTTAGAGCTAAGAGGGACTAGTGAGTAG 1407 0.4307 YTMGFYTQNLFSSFTSASSWFEVYAAFSTFTMLLRTAFIQLIPQQFRSFIVSKLESFFSKYQANSEIRLKINKFWDKNSGDRNELFDAAQEYLPTRIIHTYKSLKVGKLQGEKHIELAVYGSEDVVDEFEGTKFTWKLDEEGSKQDSNNHNKKYSFELTFNEKHREKALDLYIPHVIKTYEVMKAERRIVRIYSWLDDDWNDSELSHPATFDSLALSPELKKDIIDDLERFLRRKEHYKKVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELTSVYSNSDLMQSMKEASNRSIVVIEDIDCNEELHARSIGLSDDQDSDADNEAAKVKTSRFSLSGLLNYMDGLWSSGGEERIIIFTTNHKEKIDPALLRPGRMDMYIHLSYLKGKAFRVLASNYLDIEGDHPLFEEIDELLEKLQVTPAVVAEQLMRNEDPDDALEALVTFLKEMDKDSNCDLELRGTSE* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0606 468 Pfam ATPase family associated with various cellular activities (AAA) 250 388 IPR003959 GO:0005524|GO:0016887
Gso11g0606 468 SMART AAA_5 245 391 IPR003593 -
Gso11g0606 468 CDD AAA 246 389 - -
Gso11g0606 468 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 13 458 - -
Gso11g0606 468 Gene3D - 202 385 IPR027417 -
Gso11g0606 468 Pfam Domain associated at C-terminal with AAA 42 138 IPR025753 -
Gso11g0606 468 ProSitePatterns AAA-protein family signature. 359 377 IPR003960 GO:0005524|GO:0016887
Gso11g0606 468 PANTHER BCS1 AAA-TYPE ATPASE 13 458 - -
Gso11g0606 468 Gene3D - 386 453 - -
Gso11g0606 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0606 Gso-Chr11 5400458 5402152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0606 243 387 Calmodulin-binding Proteins AT3G56690 33.333 6.75e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0606 - K08900 gmx:100788270 935.636