Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0590 ATGAATGATTTGATGACAAAGTCGTTCCTAAGTTATGTGGAACTGAAGAAACAGGCTCGGAAGGACCTTGAAGACGACGATCTTGACATTGAAGCAGGGAAACTCAACCCCACGGAAGACCGCAGCCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAAGTTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAGACAAAGTGCACCCACGGTGCCAAAGTTCTCCGCGGCCTAAGGGACAGGATGGAGTCAGACATGGTTGCCGTGCTTCGCAAGGCACTGATCATCAAGGCAATGCTCGAGGTTCTTGACCAATCCAACATAGACAATCGTAGTTTGTCAGAATCCTACAAAGAAGGGAGCCCCATTGACAGGACCAGAATGTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGACTTTCAGTCCTTGAGGGACAAGATTCTATCTGAACACAAGGAAGATTTGAAGAGAAGGTACTATACCACGACCGGTGAGGTTCCTACTGAAGAGGTGATGGAGAAGATGGTTTCTGGGAGTCTTAAAGTTGAGTTTTTGGCTGGAAAAACGGATGCTGATTTGGGCACTCAGGTTAGGCACGAGGCATTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTATTCTGGTTGAGACACAGGGTGAAAAGTTGGATAACATTGAGGATAATGTGGTTAATGCTGGTAACTTCATCCATGGTGGGACTAATAGTCTTTACAATGCCAACCAGATGAAGAAGAAGAACAGAAAGTGGTTGTGTTGGGTTTTTGCTGTGGGGCTGATCATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 900 0.4467 MNDLMTKSFLSYVELKKQARKDLEDDDLDIEAGKLNPTEDRSLSQFFQEVEAIKFEMEEITNLLFDLQQLNEETKCTHGAKVLRGLRDRMESDMVAVLRKALIIKAMLEVLDQSNIDNRSLSESYKEGSPIDRTRMSVTNGLRVKLRDMMNDFQSLRDKILSEHKEDLKRRYYTTTGEVPTEEVMEKMVSGSLKVEFLAGKTDADLGTQVRHEALMDIQRSLNKLHQVFLDMAILVETQGEKLDNIEDNVVNAGNFIHGGTNSLYNANQMKKKNRKWLCWVFAVGLIILLVCIVAMLSS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0590 299 Coils Coil 53 73 - -
Gso11g0590 299 CDD SynN 43 193 IPR006011 GO:0016020
Gso11g0590 299 SUPERFAMILY t-snare proteins 41 260 IPR010989 GO:0016020|GO:0016192
Gso11g0590 299 PANTHER SYNTAXIN-112 3 295 - -
Gso11g0590 299 PANTHER SYNTAXIN 3 295 IPR045242 -
Gso11g0590 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Gso11g0590 299 CDD SNARE_syntaxin1-like 209 264 - -
Gso11g0590 299 Pfam SNARE domain 241 291 IPR000727 -
Gso11g0590 299 SMART SynN_4 38 165 IPR006011 GO:0016020
Gso11g0590 299 Pfam Syntaxin 45 240 IPR006011 GO:0016020
Gso11g0590 299 Gene3D - 202 298 - -
Gso11g0590 299 SMART tSNARE_6 200 267 IPR000727 -
Gso11g0590 299 Gene3D - 38 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0590 Gso-Chr11 5288732 5289788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0590 1 299 SNARE and Associated Proteins AT2G18260 58.442 2.42e-128 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0590 K08486 - gmx:100779708 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0590 11 5288732 5289788 Gso11g0590 11 5288732 5289788 ECH
Gso1g1488 1 51555485 51561797 Gso11g0590 11 5288732 5289788 GST