Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0587 ATGTCGTTGAAAAGCATAGTAAGGGAGCTAAAGGAGATGAGGGATGGGATTGGTAGCATGTCAAGGCGAGGTGTCGAGAGCAGGCGTTGGAACGGTCGGACAAAGTCACATGTTGCTCCTGATGTCACTCTAACTTCACTTGAACCTATTCAGCAAGGGCATTGGGCGAATTTGCCGCCCGAATTGCTTCTGGACATAATAAGGAGGGTGGAAGACAGTGAGACTACCTGGCCAGCACGAGCCGTTGTGGTTTATTGTGGTTCAGTTTGTAAATCGTGGAGGGCCGTTACGAAAGAGATTGTTAAGACTCCTGAACAATGTGGAAGGCTCACATTTCCCATTTCATTGAAGCAGCCTGGTCCTCGTGATTCTCCAATACAGTGTTTTATCAGGAGGAACAGAGAAACTTCAACATATCTGTTGTACATTGGCCTGGTACCATCGGAGAACGAGACTGATAAGTTGTTATTAGCTGCAAAAAAGGTAAGAAGGGCAACAGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCCCCACATGGAGCTGCAATTCAACCAGATAGTCAGCCTAGTAGGAGATTTCATTCAAAGCAGGTATCTCCTAGAGTTCCAGCATGTAACTATGTTGTTAGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCACTGCACCATGAACTCCATACCTGTCTCAGCTGTTCAAGCAGGGGGCAATGCTCCAACTCCTACTTTTCCTGAAATCATTGATGAGCCTTTTTCTCCCTCACCAGCACTGAAAGGAAAGGGTCCAATTAGAGATTTAGACAATGCAAGCCTCCCAGAGCTACTACCAGTAGAGAGCCAAGGCTCAGCTGAGCCTCTTGTACTTAAAAATAAGGCTCCTAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGTCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAGCAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACTATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGTTTGAGCAGCTTTGATACCAAACCAGCCTGTGAATGA 1245 0.4522 MSLKSIVRELKEMRDGIGSMSRRGVESRRWNGRTKSHVAPDVTLTSLEPIQQGHWANLPPELLLDIIRRVEDSETTWPARAVVVYCGSVCKSWRAVTKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFIISLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAAIQPDSQPSRRFHSKQVSPRVPACNYVVSTIAYELNVLRARGPRRMHCTMNSIPVSAVQAGGNAPTPTFPEIIDEPFSPSPALKGKGPIRDLDNASLPELLPVESQGSAEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVSAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0587 414 PANTHER TUBBY-RELATED 1 414 - -
Gso11g0587 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Gso11g0587 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Gso11g0587 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Gso11g0587 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Gso11g0587 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Gso11g0587 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Gso11g0587 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Gso11g0587 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Gso11g0587 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Gso11g0587 414 Pfam F-box domain 55 102 IPR001810 GO:0005515
Gso11g0587 414 Pfam Tub family 116 409 IPR000007 -
Gso11g0587 414 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 414 - -
Gso11g0587 414 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Gso11g0587 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Gso11g0587 414 Gene3D - 48 103 - -
Gso11g0587 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0587 Gso-Chr11 5259028 5262069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0587 1 414 TUB Transcription Factor Family AT2G18280 65.217 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso11g0587 Tub 2.1e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0587 K19600 - gmx:100778290 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0587 11 5259028 5262069 Gso11g0587 11 5259028 5262069 ECH
Gso1g1494 1 51585972 51589245 Gso11g0587 11 5259028 5262069 GST
Gso11g0587 11 5259028 5262069 Gso2g0466 2 4897180 4900625 PCT
Gso11g0587 11 5259028 5262069 Gso16g1103 16 29763972 29767458 PCT
Gso2g0466 2 4897180 4900625 Gso11g0587 11 5259028 5262069 PCT
Gso16g1103 16 29763972 29767458 Gso11g0587 11 5259028 5262069 PCT