Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0586 ATGGTAACTGATATTGGTGAAGGGGAAGAGTTACAAAATCCCCGCTCCTTTAAGGTGCATAGTAAAATCTGCACAGAACTCACAGAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGATACTCTTCAGGAATAGAGTCTCTATGTTTGCTGAACAATGCAATTGATAAAGTCAAACTACTTCTGCAACATTGCTCCGAATGTAGCAAATTCTACCTGGCTATGACAGGAGATACAGTACTCTCAAGATGCCTAAAGGCAACAAGATCATTAGAGAAAAGCTTAATCCAAATTCAAGATATGGTTCCTGTTATGTTGGCTGTAGAGGTTTCTAGAATAATTCATGATCTAGAATGTACAAGACTTGTTCTGGACCCTAATGAAGAAAAGGCTGGGAGGGTTGTGAGAGAGTTGCTTACTTTAACCTCAGATTCAGCTGATGATTCTGAAGTTAAAGCTCTTCAGTTTGCAGCATCTACACTGAATATAACATCCCCAAAGGCCATCTTAATAGAGCAACGATCTATTAAGAAGTTGTTAGATAAACTTGGACCCAATGACCTCCCAAAGAAGAAGATACTGAGATATCTTCTGTATCTACTGAAAAAGCATGGAAAGCTCATGGTGGGGGAACATGTGGAGGAGGTCTATTCTCGTTCTGAGGAACAAGCTGCAACAGAGAACTCGAATCACGATTCCCTACGAAGCCATCATGTTGATTCAGACACAATCTTGAAGTATGGTCAGTATAAAACTCACACCAATGAGTTAAGTGGAGTTGCACCACTTGAGGAATATAAGTGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGATTCAGGAGTAACATATGAAAGAATGTGGATAAAAAAGTGGTTTGATGAGGGTAATGACATATGTCCCAAAACCAGAAAGAAACTAGTCCATATGGGATTAACTCCAAACATGGCCATGAAAGACTTAATATCAAAGTGGTGCAGAAATAATGGAGTCTCCATTCCAGACCCTAGTAGGCATGCAGAAGATATTTGTGCATGGGAAGCTTCAAACACTTCCATTAGCAGCTTAGGAAGTTATTTCAATGATTTCACCGCACCAGTGGATCTTAGTAGCATGTCAATTGGGCCATTGGATACTAGTTTCAGTTTAGATGCCTCACATGGTAAGACCACTCGTGGCTCAAATTTGATGCAGACCAAGAGCCGTGACAATTCTCACAAACATCAGGCTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCTGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGATTTGAAAGATAATTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCAGCAGAGAATTTCATCGAACCACTCGTCAGGTTTCTGAGCAATGCATATGATCTGCGTGATATTAAAGCACTGAGAGCTGGAACTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGAAATGGTACGACTAATTTGAATGAAGATACTTTCATTATGTTGGCAAGTTTTCTCAATTCAGATGTGATTGGAGAAACTCTTGCCATAATGGAAGAACTGTCAGGATATGGGTTTAGTAAAGCTAAAATTGCAGCATCCAGTGCTCTCAGTTCTATTCTAAACATGCTTGATTCTGAAAACAAAGGTTTCCAACAGCAAGCTATTAGAATAATGTACAACTTGTCCTTCAGTGGTGAAGTTTGTCCCCGCATGCTATCTCTCAGGTGCATCCCAAAATTGCTGCCATTTTTTAAAGACAGAACCCTTTTGAGATACTGTATATATATATTGAAAAATCTTTGTGACACTGAAGAGGGTAGGAAATCTGTTTCTGAAACAAAGGGATGCTTATCTTCTGTTGCTGAAATACTTGATACAGGCAATAACGAGGAACAAGAACATGCGCTGGCTGTTCTAGTCTCTCTATGTTCTCAACATGTGGATTATTGTAAGTTGGTAATGCGTGAGGATGAGCATATCATAAGTCTTCTTATCTATATCTCACAGAATGGAAATGACAGAGGAAAAGGAAGTGCATTGGAATTGCTTCATCTTTTGAAAGATATTGACATTGCTGAGAATGAAGGTTGTCCTGAGCCAAATATCAACAACTCTTCTCGAGATTCTAACAGTTACCACCCTGAAGAAAATCAACCATCAAAGAAATCCACGTTTCTGAAGAAACTATCACCGTTCTCAAAGTCCAGTTCACATGCATCAAAAACCAAAAGATGA 2286 0.3941 MVTDIGEGEELQNPRSFKVHSKICTELTELVDRISRIVPDIEAARPGYSSGIESLCLLNNAIDKVKLLLQHCSECSKFYLAMTGDTVLSRCLKATRSLEKSLIQIQDMVPVMLAVEVSRIIHDLECTRLVLDPNEEKAGRVVRELLTLTSDSADDSEVKALQFAASTLNITSPKAILIEQRSIKKLLDKLGPNDLPKKKILRYLLYLLKKHGKLMVGEHVEEVYSRSEEQAATENSNHDSLRSHHVDSDTILKYGQYKTHTNELSGVAPLEEYKCPISSRLMYDPVIIDSGVTYERMWIKKWFDEGNDICPKTRKKLVHMGLTPNMAMKDLISKWCRNNGVSIPDPSRHAEDICAWEASNTSISSLGSYFNDFTAPVDLSSMSIGPLDTSFSLDASHGKTTRGSNLMQTKSRDNSHKHQAHTEIHDTDLMLLPQLCDLQWDSQCKVIQDLKDNLKSNSQAFVSVSAENFIEPLVRFLSNAYDLRDIKALRAGTQLLLEFVNNCRNGTTNLNEDTFIMLASFLNSDVIGETLAIMEELSGYGFSKAKIAASSALSSILNMLDSENKGFQQQAIRIMYNLSFSGEVCPRMLSLRCIPKLLPFFKDRTLLRYCIYILKNLCDTEEGRKSVSETKGCLSSVAEILDTGNNEEQEHALAVLVSLCSQHVDYCKLVMREDEHIISLLIYISQNGNDRGKGSALELLHLLKDIDIAENEGCPEPNINNSSRDSNSYHPEENQPSKKSTFLKKLSPFSKSSSHASKTKR* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0586 761 SUPERFAMILY RING/U-box 263 346 - -
Gso11g0586 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 343 IPR013083 -
Gso11g0586 761 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Gso11g0586 761 MobiDBLite consensus disorder prediction 713 761 - -
Gso11g0586 761 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 739 - -
Gso11g0586 761 PANTHER U BOX DOMAIN-CONTAINING 9 739 - -
Gso11g0586 761 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Gso11g0586 761 Gene3D - 430 714 IPR011989 -
Gso11g0586 761 Pfam U-box domain 271 339 IPR003613 GO:0004842|GO:0016567
Gso11g0586 761 SUPERFAMILY ARM repeat 431 703 IPR016024 -
Gso11g0586 761 CDD RING-Ubox_PUB 273 315 IPR045210 -
Gso11g0586 761 MobiDBLite consensus disorder prediction 715 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0586 Gso-Chr11 5252464 5258257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0586 14 707 U-box Gene Family AT4G36550 38.714 5.44e-150 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0586 - - gmx:100791627 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0586 11 5252464 5258257 Gso11g0586 11 5252464 5258257 ECH
Gso1g1495 1 51590990 51597509 Gso11g0586 11 5252464 5258257 GST
Gso11g0586 11 5252464 5258257 Gso2g0468 2 4905221 4910894 PCT
Gso11g0586 11 5252464 5258257 Gso16g1105 16 29776063 29781742 PCT
Gso2g0468 2 4905221 4910894 Gso11g0586 11 5252464 5258257 PCT
Gso16g1105 16 29776063 29781742 Gso11g0586 11 5252464 5258257 PCT