Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0583 ATGGCAATGAGAGGGCAACAAGATAAGGAAATAGAGATACCAACCACAACCACTTTAGGTTACAACCTTCCCAACCGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACTGTTGGTGAAAGAAGTAGCAGTGATCATGATCAACAGCATCATCAACCAACTCATCAAACTCGCACATTAATCTTCAACGAAACACCTCACCATAATCTCTATCCACCACCACCACCTCCTCCTCCTGCTCTTGCACCTCATCGACCCACGTCAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCGAATCCCTCAAGAACAGCGCCGCCTCAAACGACAACAACAACAACCTCGACGCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCGAGCATGGGGAGCCACGTGGTGGATGGCTGCGGCGAGTTCATGGCAAGTGGGGAAGAAGGCACGCCAGAATCACTAAGATGCGCAGCATGCGAGTGCCACCGCAACTTCCACAGAAAAGAAGTTGAAGGAGAATTACGACCGCAACCACAACCACAACCGCAAACACATGTTCCAAATTACCACAGCTACTACACCAACAAGCACAACGGTCACCTTCACTACCCTACACCCTCTTCATCTTCCCTCCATCATAGATTGGTTACACCAACAAGCTTGGTCTCCCCAGTGATGATGGCCTTTGGGGGCCCAGCTGAGTCATCAAGTGAAGATCTCAACATGTTTCAGTCCAACACTGGAGGAGCACAGTTAATATCAGTGCAGCAGCATGCACCACTACTCTCTTCCAGCAAGAAGAGGTTCAGGACTAAGTTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGACAAGATTGATTGGAAGATCCACAAACACAATGAGCAGGAGGTACAGCAGTTTTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTTAAGGTTTGGATGCACAATAACAAGCAAACAACTAGTAGTAAGAAGCAGCAAATCTAG 1011 0.4847 MAMRGQQDKEIEIPTTTTLGYNLPNRDSSSSSSKLSSPTVGERSSSDHDQQHHQPTHQTRTLIFNETPHHNLYPPPPPPPPALAPHRPTSDPDLSTPIAPTSNPSRTAPPQTTTTTTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGELRPQPQPQPQTHVPNYHSYYTNKHNGHLHYPTPSSSSLHHRLVTPTSLVSPVMMAFGGPAESSSEDLNMFQSNTGGAQLISVQQHAPLLSSSKKRFRTKFSQHQKDRMMEFADKIDWKIHKHNEQEVQQFCSQVGVKRQVFKVWMHNNKQTTSSKKQQI* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0583 336 MobiDBLite consensus disorder prediction 70 87 - -
Gso11g0583 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 51 331 - -
Gso11g0583 336 Gene3D - 258 333 - -
Gso11g0583 336 Pfam ZF-HD protein dimerisation region 122 174 IPR006456 -
Gso11g0583 336 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 123 174 IPR006456 -
Gso11g0583 336 MobiDBLite consensus disorder prediction 94 119 - -
Gso11g0583 336 MobiDBLite consensus disorder prediction 176 195 - -
Gso11g0583 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 331 - -
Gso11g0583 336 MobiDBLite consensus disorder prediction 1 119 - -
Gso11g0583 336 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 270 327 IPR006455 -
Gso11g0583 336 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 124 173 IPR006456 -
Gso11g0583 336 MobiDBLite consensus disorder prediction 10 44 - -
Gso11g0583 336 SUPERFAMILY Homeodomain-like 264 328 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0583 Gso-Chr11 5216820 5219416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0583 95 332 ZF-HD Transcription Factor Family AT2G18350 48.347 2.24e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso11g0583 ZF-HD_dimer 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0583 - - gmx:100776691 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1497 1 51633198 51635293 Gso11g0583 11 5216820 5219416 GST
Gso11g0583 11 5216820 5219416 Gso2g0469 2 4943491 4945615 PCT
Gso11g0583 11 5216820 5219416 Gso16g1107 16 29830473 29832477 PCT
Gso2g0469 2 4943491 4945615 Gso11g0583 11 5216820 5219416 PCT
Gso16g1107 16 29830473 29832477 Gso11g0583 11 5216820 5219416 PCT