Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0582 ATGCATCGCTGTTGCAGTGGTTCCCAGGGGCACGTGATGGGACCCTGCACATGTGGTATGTTTCACAGCCAAACCACCAGCTCCTTCGCCATGTTCTTCTCCATGCCCAACCACAAACCACCACCCTACGATGATTCCGACAACATTTATGACTATTCTTCCTTCACTCCCTCTTCCTCTTCTTCCGTTGACTGCACCCTCTCCCTCGGTACCCCTTCCACCCGCTTCTCCGAAGACGAAGAAAAACGAAGCCGCCACGAACGCCGTTCCGTCTCTAACTTCTGCTGGGACTTACTACAATCCAAACACAACAACCCTCAATCCCATTCCAAGTCCTCCCGAACCACCAACACCACCGACCCTCTCCTCGCTCGCCGCTGCGCCAATTGTGATACCACTTCTACTCCTCTCTGGAGAAATGGCCCCCGTGGCCCCAAGTCACTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAGAGAAGAGCGAGTGCGGCCGCCGCCACGCCGGCATCGGCGGCTTCCGGTGGCGTTATGGAATCGGCGCAGGTGTACAATAACTCGTGGTACGCACACCAGCAGAGTCAGAAGATGCAGTGCTTCTCGCCGGGGATGGGGAACGAGTTCCGTTTCGTGGATGACGCCGATAGAGACGCCGCCGATAACGGCATTCCGTTCCTCTCGTGGAGACTCAACGTCACGGACAGAACGAGCCTGGTTCACGACTTCACGAGATGA 738 0.5623 MHRCCSGSQGHVMGPCTCGMFHSQTTSSFAMFFSMPNHKPPPYDDSDNIYDYSSFTPSSSSSVDCTLSLGTPSTRFSEDEEKRSRHERRSVSNFCWDLLQSKHNNPQSHSKSSRTTNTTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAATPASAASGGVMESAQVYNNSWYAHQQSQKMQCFSPGMGNEFRFVDDADRDAADNGIPFLSWRLNVTDRTSLVHDFTR* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0582 245 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Gso11g0582 245 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Gso11g0582 245 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Gso11g0582 245 ProSiteProfiles GATA-type zinc finger domain profile. 121 157 IPR000679 GO:0006355|GO:0043565
Gso11g0582 245 SMART GATA_3 121 176 IPR000679 GO:0006355|GO:0043565
Gso11g0582 245 PANTHER GATA TRANSCRIPTION FACTOR 18 1 244 - -
Gso11g0582 245 Gene3D - 123 198 IPR013088 GO:0006355|GO:0008270
Gso11g0582 245 PANTHER GATA TRANSCRIPTION FACTOR 18 1 244 IPR044272 GO:0003700|GO:0009908
Gso11g0582 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 124 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0582 Gso-Chr11 5201719 5203446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0582 17 245 C2C2-Gata Transcription Factor Family AT3G50870 43.448 4.62e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso11g0582 GATA 5.9e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0582 - - gmx:100790571 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0582 11 5201719 5203446 Gso11g0582 11 5201719 5203446 ECH
Gso11g0582 11 5201719 5203446 Gso2g0473 2 4994294 4996240 PCT
Gso11g0582 11 5201719 5203446 Gso16g1116 16 29931137 29933409 PCT